FMO12269.5prime Sequence
761 bp (760 high quality bases) assembled on 2012-08-29
> FMO12269.5prime
GTCGACATGTTCGGTGGACAGCAGCCAATACTCGTGTTGAGTCAAAACAC
AAAGAGAGAATCGGGCCGCAAAGTGCAGTTGGAGAACATCCAAGCCGGAA
AGGCCATCGCCGATGTGATACGCACATGTCTGGGGCCACAGGCCATGCTG
AAGATGCTGATGGACCCAATGGGCGGCATCGTGATGACCAACGATGGCAA
CGCCATCCTGCGTGAGATCACTGTGCAGCACCCGGCGGCCAAGAGCATGA
TTGAAATTGCTCGCACACAAGACGAGGAGGTTGGCGATGGTACCACATCG
GTCATCGTCCTGGCCGGCGAGATGCTGGCCGCCGCCGAGCCCTTCCTCCA
GCAACAGATCCACCCCACTGTTATCATTCGCGCCTATCGCGAGGCCCTCG
AGGACATCGTCGGCCACCTGCAGTCCCAGCTTAGCATCCAGTTGGTTTTC
AAGGATAAGGCCAAGATGGCCGATGTGGTCAAGGCCTGTGTGGGCACCAA
GTTCATTGGCAAGTGGTCCGACCTTGCCGTCAAGATTGCCCTGGACGCAG
TCGAGACAGTGACGCTAAGTGAGAACGGCCGTCTGGAGGTAGACTTTATA
CGCTATGCCAAGGTGGAGAAGATCCCGGGTGGCGCCATCGACGAGTCGTG
TGTTCTTAAGGGCGCGATGATCAACAAAGACGTGACGCATCCCAAGATGC
GACGCCTCATCGAGAATCCCCGCATCGTGCTGCTTTGACTGCTCGCTGTG
AGTACAAGAAG
FMO12269.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:04:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cctgamma-RD | 2071 | CG8977-RD | 198..950 | 7..761 | 3620 | 98.8 | Plus |
| Cctgamma-RC | 2086 | CG8977-RC | 213..965 | 7..761 | 3620 | 98.8 | Plus |
| Cctgamma-RB | 2165 | CG8977-RB | 292..1044 | 7..761 | 3620 | 98.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:04:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 16648133..16648634 | 101..602 | 2435 | 99 | Plus |
| 3R | 32079331 | 3R | 16648700..16648857 | 602..761 | 670 | 97.5 | Plus |
| 3R | 32079331 | 3R | 16647988..16648050 | 41..103 | 315 | 100 | Plus |
| 3R | 32079331 | 3R | 16647896..16647931 | 7..42 | 180 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 18:04:05 has no hits.
FMO12269.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-08-29 09:56:20 Download gff for
FMO12269.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cctgamma-RC | 224..981 | 1..761 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:42:28 Download gff for
FMO12269.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cctgamma-RB | 287..1044 | 1..761 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:48:41 Download gff for
FMO12269.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cctgamma-RB | 287..1044 | 1..761 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:48:41 Download gff for
FMO12269.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 16647988..16648049 | 41..102 | 100 | -> | Plus |
| 3R | 16648135..16648634 | 103..602 | 99 | -> | Plus |
| 3R | 16648701..16648857 | 603..761 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:42:28 Download gff for
FMO12269.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 12473710..12473771 | 41..102 | 100 | -> | Plus |
| arm_3R | 12473857..12474356 | 103..602 | 99 | -> | Plus |
| arm_3R | 12474423..12474579 | 603..761 | 97 | | Plus |
