Clone FMO12270 Report

Search the DGRC for FMO12270

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:122
Well:70
Vector:pMK33-CFH-BD
Associated Gene/TranscriptMap60-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO12270.5prime Sequence

556 bp (556 high quality bases) assembled on 2012-08-29

> FMO12270.5prime
AGTCGACATGGCAATCCAACTGGACAAGATTCTGCAGGACATCGCCAAAG
AAAAGGTGCTGCATCCAAACAATGGCGGCGCCAGCAAGCAGGAGCAGGAG
GAGGCGTGGGCCAGGATCGGGCGTCTCAACAAGCTCTCTGTGCACGAATC
GCGCTCCATCTTCATAGTGCTCCAAAAGAAGTACGAGCAGGAAAAGCTAA
AGGGCAATTCGGCGTGGAAGCTCTTCAGTCTGATGCATCAGATCCATCAG
GAGCCTAAAATCTCAATCAAGGAGGAGAATGATCAAGTACCCATGGAGGA
GGTGGAGGAGTACGAAATGCTGGAGGTGCAGGAGCCTGAGGACGAGGATG
ACGCCCATCAGTACGGACAGCACACCAACTCTACCGGCTCGGCGTCCTCC
GACGGCGAAAGCCCCACAAAGTCACACAGCACCGGTTCGCCAGAAAAGGA
CTATCGGTTGGCGTACGCCAAACCCAACGTCGACACTCCTCGCCCAGCCA
TCGAGGAGAAAAAGCTGCTCAACACACTGGCTAACAACACACCGCGAAGT
AGCTCG

FMO12270.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:03:48
Subject Length Description Subject Range Query Range Score Percent Strand
Map60-RA 1814 CG1825-RA 163..711 8..556 2715 99.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:03:46
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 9591029..9591300 8..279 1360 100 Plus
2R 25286936 2R 9591365..9591641 280..556 1355 99.3 Plus
Blast to na_te.dros performed on 2014-11-28 18:03:47 has no hits.

FMO12270.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-08-29 09:56:15 Download gff for FMO12270.5prime
Subject Subject Range Query Range Percent Splice Strand
Map60-RA 198..752 1..556 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:42:16 Download gff for FMO12270.5prime
Subject Subject Range Query Range Percent Splice Strand
Map60-RA 157..711 1..556 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:48:29 Download gff for FMO12270.5prime
Subject Subject Range Query Range Percent Splice Strand
Map60-RA 157..711 1..556 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:48:29 Download gff for FMO12270.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 9591365..9591641 280..556 99   Plus
2R 9591023..9591300 1..279 98 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:42:16 Download gff for FMO12270.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 5478528..5478805 1..279 98 -> Plus
arm_2R 5478870..5479146 280..556 99   Plus