FMO12273.5prime Sequence
1040 bp (905 high quality bases) assembled on 2012-08-29
> FMO12273.5prime
AGTCGACATGGCCACAACCTGCATGCCGCATTTCACGGAATATTTTCAAA
CCACCACCCAGTCAGAGTTAACAACAAATGAAAGTGCCAACAGCAGAAGC
AGCAGCAGCAGCAGTGGCTGTAGAGAACCGTCCAAAACCAGTGGCTTCTT
CTACAGCGCCAGCACACATTACCAGAGCAAAGTGCAGCAGCTAATCAGCT
TCAGCTTCACCTCATCGTTCCACCTGCTCTTCATCACCTGCATACTGAGC
ATCAGCAAATTCTGCAATGCGGCGGCGGTAAATGCCGCCCATGTGACCGC
TGCCACGCCCACTGCCAGCGAGATAATGCACAATCTGAGCGGATCGGCGC
TGCTAGAGCGTCTGAAAGCCAGTACTCTGGGACCCACCCTCGATCAGCTG
AAGCATCTGGCTCCTGCGGCAGCCAACAGCATTAGTCCTGGTACAGGATC
TTTTCATGGGAATCGGGATGGGACACTTTGGCAGTTCCATTAATTCGGTG
CTAAACGGAAATCCTTTAAAGTTCTTGAATGTGTCAGGAAAAATCGGCAC
TCCTTTGGACATATCTCTCGGTCTGAGCAACTACTGCGATGAGAAGCAGT
TCCAGTGCTCCATCGGCGAATGTATCCCCATACGGTTCGTGTGCGATGGC
TCCTCGGATTGCCCGGACCACAGTGATGAGCGGCTGGAGGAGTGCAAGTT
TACAGAATCAACTTGCAGCCAGGAACAATTCCGCTGCGGCAACGGAAAGT
GCATTCCGCGAAGATGGGTCTGCGATCGGGAAAACGACTGCCGCCGATGG
AAGCGATGAATCGACGTCCCAGTGCCGAAGCCACACATGTTCGCCCGAGG
AGTTTGCCTGCAATCTGGCGAGGGCGAGTGCTTTCCCTTGTCCTGGATGT
GCGATTCAGAATAAATATTGTCGCGATGGATGCTGATGATGCGCAGTGCA
ATAAGGACATTGTCGTTCGACGAAGTTACCTGGCGGAAATGGACGTTGCC
TTTCAAAATCGCTTTCCAAGTGCGTACAATGACTACCGAT
FMO12273.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:04:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
LpR2-RE | 4189 | CG31092-RE | 234..1250 | 8..1033 | 4570 | 97.2 | Plus |
LpR2-RC | 4581 | CG31092-RC | 234..1250 | 8..1033 | 4570 | 97.2 | Plus |
LpR2-RG | 4186 | CG31092-RG | 234..1051 | 8..827 | 4005 | 99.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:04:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 25739055..25739610 | 564..8 | 2705 | 99.5 | Minus |
3R | 32079331 | 3R | 25722416..25722556 | 705..565 | 690 | 99.3 | Minus |
3R | 32079331 | 3R | 25713841..25713964 | 827..703 | 575 | 99.2 | Minus |
3R | 32079331 | 3R | 25710020..25710147 | 955..827 | 395 | 92.3 | Minus |
3R | 32079331 | 3R | 25754348..25754465 | 702..585 | 245 | 80.5 | Minus |
Blast to na_te.dros performed on 2014-11-28 18:04:10 has no hits.
FMO12273.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-08-29 09:56:22 Download gff for
FMO12273.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
LpR2-RE | 234..1242 | 8..1024 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:42:33 Download gff for
FMO12273.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
LpR2-RC | 234..1242 | 8..1024 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:48:44 Download gff for
FMO12273.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
LpR2-RC | 234..1242 | 8..1024 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:48:44 Download gff for
FMO12273.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 25713842..25713961 | 706..826 | 99 | <- | Minus |
3R | 25722416..25722556 | 565..705 | 99 | <- | Minus |
3R | 25710025..25710147 | 827..950 | 92 | <- | Minus |
3R | 25739055..25739610 | 8..564 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:42:33 Download gff for
FMO12273.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 21539564..21539683 | 706..826 | 99 | <- | Minus |
arm_3R | 21548138..21548278 | 565..705 | 99 | <- | Minus |
arm_3R | 21535747..21535869 | 827..950 | 92 | <- | Minus |
arm_3R | 21564777..21565332 | 8..564 | 99 | | Minus |