FMO12274.5prime Sequence
833 bp (831 high quality bases) assembled on 2012-08-29
> FMO12274.5prime
GTCGACATGTCTGCGGCCGAACTCGAGGCGGAGGCTTCAGCCCAGGAGCA
ACAATCCCAGCAACAACAACAAAATCAATCACAAAGCGAGGAGATAAATA
CAAACACTGCCATCAATGCAAATGCAACCACAACAAATAGCTACAACAAT
AATTTAGATACGGAAACCCAGCTTCAGATGCACCAGGATCCGCAGCAGCA
GCAGGAACTCGAGGGCAATAGCAACAATGGCATCACAGGACTCGGCCTCA
GTCTGATGAACTCCTCACCGCCGCCGCACAGCTACCGACATTCGCGGGCC
TATCGCCACTTCAAGAATCCGCCACAGCCCCACATGTGCATCCGCACCAC
CACGGAGGCGGGCGAGGAGCTCTTCATCAATGTCCTCAGCTGGACGCGCA
TTGTGATACCGCAGGAGCCCAGCGATCCCATTCCCCTTTACGGAGGCATG
CGGGTACCGCCTGGCAGCCCACGCAGTCCTCCCATTGTCTTTGCCGTAAT
GGCCAATCCGGAGGTGCTCAAAGACTCCGGACGTCACAGCAAAGATCCTG
AGGAGCGACGAGCTATGGTGGAGCTGATGTGCGACTTTGTGGAGGCTATG
AATCCAGGCGTGAAATTAGTCAGAAACGCCGTAATACTCAAGGATCGCGA
TATCTCCGGCGAGCTGAAGGATGTCTGGAATGCCGTTCAGGCGCAGCGCG
ATCGCGAGAGGGAGGAGCAGATGATGCAGCAGCGCCAGCAGCAGCACTAC
CAGAACATCACCACGCAACAGATGTTTCCCAAATCGCCGGATGCATCGCG
GGCAGCTTAGTGCTTGGTGCTGCAGTGAACGAG
FMO12274.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:04:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4022-RC | 4262 | CG4022-RC | 632..1457 | 6..833 | 4090 | 99.8 | Plus |
| CG4022-RB | 2778 | CG4022-RB | 686..1511 | 6..833 | 4090 | 99.8 | Plus |
| CG4022-RA | 2394 | CG4022-RA | 776..1601 | 6..833 | 4090 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:04:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 9409517..9409967 | 456..6 | 2255 | 100 | Minus |
| 3L | 28110227 | 3L | 9408984..9409194 | 833..621 | 965 | 99.1 | Minus |
| 3L | 28110227 | 3L | 9409263..9409433 | 623..453 | 855 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 18:04:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6713..6888 | 49..235 | 188 | 60.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2346..2533 | 43..226 | 182 | 59.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2796..2992 | 43..238 | 171 | 58.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2348..2512 | 34..203 | 154 | 61.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2385..2494 | 43..151 | 151 | 63.4 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1062..1117 | 716..771 | 135 | 75.4 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1127..1256 | 43..166 | 133 | 59.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2312..2390 | 693..771 | 124 | 65 | Plus |
| Dvir\Het-A | 6610 | Dvir\Het-A HETAVIR 6610bp | 3294..3417 | 43..172 | 122 | 58.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2328..2383 | 169..226 | 114 | 69 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2961..2996 | 43..78 | 108 | 77.8 | Plus |
FMO12274.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-08-29 09:56:23 Download gff for
FMO12274.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4022-RA | 772..1600 | 1..833 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:42:36 Download gff for
FMO12274.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4022-RA | 773..1601 | 1..833 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:48:46 Download gff for
FMO12274.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4022-RA | 773..1601 | 1..833 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:48:46 Download gff for
FMO12274.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 9408984..9409191 | 624..833 | 99 | <- | Minus |
| 3L | 9409263..9409432 | 454..623 | 100 | <- | Minus |
| 3L | 9409520..9409968 | 1..453 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:42:36 Download gff for
FMO12274.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 9402084..9402291 | 624..833 | 99 | <- | Minus |
| arm_3L | 9402363..9402532 | 454..623 | 100 | <- | Minus |
| arm_3L | 9402620..9403068 | 1..453 | 99 | | Minus |
