FMO12277.5prime Sequence
1065 bp (958 high quality bases) assembled on 2012-08-29
> FMO12277.5prime
AGTCGACATGGAAAACTTAAACTTTGCACGCACGCCGCAATTTCTGCGCA
AAGTTATCTCCGAGGCGCGCAGATCGTTTATAAACAGCGACCATTTTTCC
GCCTCATCGACAAGGGGACGCTCGGAAACTGAGGAGGAGGCTATATCCGA
AATGGAGCTGGCCCACACTTTGATCCTTAATGAGGATGCTCTCAAGCAGT
TGCCCGAACACAAGCGGCCTGTGTTCGAGTTGGAATGGCTGCGCTACTTG
GAGAAGGCCCTGCCACTGGTGTCCAAAGCGGAGATCAAGGCGAGCCAGAA
GAAGCTGGTGCAGCAGCTCTCTGAAAGAATCCAGGGCGCACCAGGTCCGC
CCATTCGTAAGCTCATTGCTAGCGCGTTGGCCACGCTATTCTCCGTTGGT
GACACCTTCATGCTCTTCGACACCGTCAACGCCTGCAATGACATCCTGAA
GAACAAGGACGACTCGCCCAGCTACTTGCCCACAAAGCTTGCCGCCATTT
GTGTGCTGGGCTCTATGTATGAGAAGCTGGGCAGGATGATGGGCCGCACC
TACGAGGATACGGTGCAGATCCTTATTCGAACGCTTCGCAACGCTGAGTC
GCAGGCGCGGATTGAGATCATGCACACGCTGGAGAAGGTGAGCGCTGGCA
TGGGGATAGCCATTGCCAACGTGCACAAGGATATTTACAAGGCGGCCAAG
CATTGCCTGTTGGACCGAGTTATGGCTGTTCGAGTGGCTGCAGCCCGCTG
CATCCTTAAAATGATATACAGTGCACCATTCCTGTACCAAACGGAGCTGG
AAAGCTTGGGAACATTGTGTTTCCGAGCCTTCGACGGCAGCAACTATGAA
GTGCGATGTGCGGTAGCTCAGCTGCTGGGAACACTTCTAGCCTATACTCA
ACAACTGGCAGAGCGGCACAAGCAAAAAGAACAGGGACAGCGGTGGCTAT
TCAGCTGGCTAGGAGCTACCCACGCTCGCTTCCCTGGATGAGCCTCGGCA
TCTCAGGTCAGCTTTCCTTCGGGGTGCGCATCTTTCCAAGGTACCGAGAG
ATTACCAAGGCAGCT
FMO12277.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:04:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2747-RF | 7322 | CG2747-RF | 334..1408 | 8..1065 | 4785 | 97.4 | Plus |
| CG2747-RE | 7289 | CG2747-RE | 334..1408 | 8..1065 | 4785 | 97.4 | Plus |
| CG2747-RC | 7026 | CG2747-RC | 334..1408 | 8..1065 | 4785 | 97.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:04:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 8024126..8024593 | 953..490 | 2110 | 98.7 | Minus |
| 3R | 32079331 | 3R | 8024653..8025073 | 489..69 | 2105 | 100 | Minus |
| 3R | 32079331 | 3R | 8026777..8026841 | 72..8 | 325 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 18:04:25 has no hits.
FMO12277.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-08-29 09:56:25 Download gff for
FMO12277.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2747-RC | 309..1329 | 1..1011 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:42:42 Download gff for
FMO12277.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2747-RC | 328..1348 | 1..1011 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:48:51 Download gff for
FMO12277.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2747-RC | 328..1348 | 1..1011 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:48:51 Download gff for
FMO12277.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 8024061..8024593 | 490..1011 | 96 | <- | Minus |
| 3R | 8024653..8025069 | 73..489 | 100 | <- | Minus |
| 3R | 8026777..8026844 | 1..72 | 94 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:42:42 Download gff for
FMO12277.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 3849783..3850315 | 490..1011 | 96 | <- | Minus |
| arm_3R | 3850375..3850791 | 73..489 | 100 | <- | Minus |
| arm_3R | 3852499..3852566 | 1..72 | 94 | | Minus |
