FMO12278.5prime Sequence
1156 bp (1056 high quality bases) assembled on 2012-08-29
> FMO12278.5prime
GTCGACATGAAGCGAAGAAGTCAAACTAGAGCCGAACAAGCCGTTCCACC
AGCTAAAACTACAAAGGAGAATAGTGGATCGCTCACAGTGTCCCAGCTCA
GCTCCGATGTTATTTGGCAGCTGGCATCGCAGTACTGGACGCCGGACACG
AAAGCAGATCACCTGCCGTACAGTGCCAAGATCATCGAACGCATTTACAA
TGAGGAGATCGGTGATGGCGGTGGCCACAGTGCACGGAGGATAAACATGC
TGGAGTTCAGTCAGTATCTGGAGCAGTACCTGTGGCCACACTACCAACGT
GAAACCGCCACCCATGCCCACCTTATGTCCATCGTTATAATGGCCAACGA
GAAGTTCCGGGAGCGCGTCGAAGTTTGGACCGTGTTTGAAAAGCTCCCGG
ATCAGTATCCAGCCTTCTTTCGCCACGTGCTAGAGAGCTGTTTGCCGAGC
AAAAAGGCAAAGGAGGCTAGTAGCACGCTAAGGGAGCGGACAGCGCTGTT
GATGTTCATTAACCACTGCTTTAACAGCATGGAGATAGAGCTGTGCAGAG
AACAGGCCAAACGACTAGTCTCCTTGTCCATGTGGCATTGCCTGCAGCCT
CGCCGTCGCGAACAAGAGCTTCGAGAAGTTCCTGAGTGGCGAAAGTACTG
GTGACGCTTGCTCAAGAAGGAGAAAGACAGCAAACCGGAGGTCCTCTGGG
AGAGACACTTTATGCAGAACCTTATCATTGACTTCCTGCACATACTCGAA
AGCATTCCCGCCGAAGGCGAGGTGCCGCGCAACGTGGTTCACTACTGTGA
GCGCTTCCTAGAGTTTATTATCGACTTGGAGGCACTTTTGCCGACTCGAC
GCTTCTTCAACACGGTTTTAGACGACTGTCATCTGATTGTGCGGGCTCTT
CTGTCACCCTTGGTTCGTCGCGAGGAGGGAAAACTGTTTGGTCAGCTCCT
GACATGCTAAAGTTTTATACCCGCTTCGAGATCACGACGTTACTGGAAGT
TCGCTCCCTGATCCCGACATGACCCAGCTGCACTACAGAAGATCACCTCG
CTGCAGCGAGCGGTGTCGCCAAGTTTCCCAGCTGGCGGGTCTTGCTTGTC
ACGTAGCCACGTGATAACGGAAGTCCTGACAGACCTCGGTGGGTGATGCA
GAATCC
FMO12278.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:04:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31368-RD | 4630 | CG31368-RD | 83..1197 | 5..1111 | 5295 | 98.7 | Plus |
| CG31368-RC | 4621 | CG31368-RC | 83..1197 | 5..1111 | 5295 | 98.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:04:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 11883046..11883530 | 118..602 | 2425 | 100 | Plus |
| 3R | 32079331 | 3R | 11883592..11883935 | 602..945 | 1690 | 99.4 | Plus |
| 3R | 32079331 | 3R | 11882872..11882991 | 5..124 | 585 | 99.2 | Plus |
| 3R | 32079331 | 3R | 11888500..11888645 | 951..1093 | 520 | 95.2 | Plus |
Blast to na_te.dros performed on 2014-11-28 18:04:28 has no hits.
FMO12278.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-08-29 09:56:26 Download gff for
FMO12278.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31368-RD | 73..1179 | 1..1100 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:42:44 Download gff for
FMO12278.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31368-RC | 78..1184 | 1..1100 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:48:53 Download gff for
FMO12278.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31368-RC | 78..1184 | 1..1100 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:48:53 Download gff for
FMO12278.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 11882867..11882987 | 1..120 | 98 | -> | Plus |
| 3R | 11883049..11883529 | 121..601 | 100 | -> | Plus |
| 3R | 11883592..11883935 | 602..945 | 99 | -> | Plus |
| 3R | 11888494..11888651 | 946..1098 | 93 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:42:44 Download gff for
FMO12278.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 7708589..7708709 | 1..120 | 98 | -> | Plus |
| arm_3R | 7708771..7709251 | 121..601 | 100 | -> | Plus |
| arm_3R | 7709314..7709657 | 602..945 | 99 | -> | Plus |
| arm_3R | 7714216..7714373 | 946..1098 | 93 | -> | Plus |
