FMO12279.5prime Sequence
938 bp (710 high quality bases) assembled on 2012-08-29
> FMO12279.5prime
AGTCGACATGAGTGTTCGCCCCAATAACGCTGGCGATATGCTGCTCCACA
ATTCCGTAATTGGGGGCTACGATGAGTCAAAGTTTGCCGAAAAGATAACC
CACCTGACGCCCACCGAACAGGAAGCAGTGAAACGCTTCTGGAGGTCGCT
GGTTTTGCGAAGTCAACGCGCCTTCATTGAGGAAAATGCTCGTCCAATCG
CGTCCTCCGCGAATCCCGCTCCTGCGGGCATCACTCGCTCGGTGCGCAGC
TGCAACTGCTGTCCCTATGGCTACCACATCGACCTGGACTTTGTGCGCTA
CTGCGAGGCCCTCGCCCTTGAGAAGCCCAGCGAGGAGGAGCAGCGGCGGC
GGGATCGCAGAAGATCCCGAAAGTCCATGGAGTTTATGCTGGGATTTGAG
AGCCTCTTCGGCGGCGACTGGCAGGCGGAGTCCAGGGTGCAGGGAAAGCT
CAGCGAGACCTCACACGAAAGCGAACCAGATTCGCCACACCCCATTGGCG
GAGGAGGGTCGTTGCATATGTCGCAGTCGTACACCACCACTCCGTGCTAC
CGACCGCGTTCGTCATCCGTGCCGCGTTTCACCTACGGCAGTATACCGCC
TCGATCGGATTTGCCCTTCGGCACCGCTTCCTCCACGTGCTCCTCGCTAC
GCGGCGGCTTATAGAGCGATGCTGGTATCTACCATCAGCGTCATCGGCCG
GCGATCAGTCCGTGGGATACGAGGTCCTTCCTCCCGGGCGCTCGACGAGG
TGTGCAGCGATTTCGAGCGGGACGCTGGGAGCGGACTTTCCGTAAGCGAC
GCAAGGTCTCCCCTATGGAAGCTGGGATCCCTGTCCCTTGGATCGGATTA
ACAAAAAACTTAGCCTGAGCTCTGCCATGGCCATGGCGCATTGAAGGACC
TCAGAGTCATCGCCTGGGCAACAGAACGTGGGGATCGG
FMO12279.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:04:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10249-RD | 4880 | CG10249-RD | 362..1289 | 7..938 | 4080 | 96.7 | Plus |
| CG10249-RG | 5340 | CG10249-RG | 960..1749 | 145..938 | 3405 | 96.2 | Plus |
| CG10249-RC | 4551 | CG10249-RC | 215..960 | 189..938 | 3185 | 96 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:04:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 14910245..14910718 | 932..456 | 1560 | 93.1 | Minus |
| 2R | 25286936 | 2R | 14911104..14911373 | 457..188 | 1350 | 100 | Minus |
| 2R | 25286936 | 2R | 14916872..14917011 | 146..7 | 685 | 99.3 | Minus |
| 2R | 25286936 | 2R | 14914848..14914893 | 188..143 | 230 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 18:04:32 has no hits.
FMO12279.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-08-29 09:56:27 Download gff for
FMO12279.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10249-RD | 351..1285 | 1..938 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:42:46 Download gff for
FMO12279.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10249-RD | 355..1289 | 1..938 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:48:55 Download gff for
FMO12279.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10249-RD | 355..1289 | 1..938 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:48:55 Download gff for
FMO12279.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 14916874..14917013 | 1..144 | 96 | | Minus |
| 2R | 14910240..14910716 | 458..938 | 93 | <- | Minus |
| 2R | 14911104..14911372 | 189..457 | 100 | <- | Minus |
| 2R | 14914848..14914891 | 145..188 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:42:46 Download gff for
FMO12279.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 10804379..10804518 | 1..144 | 96 | | Minus |
| arm_2R | 10797745..10798221 | 458..938 | 93 | <- | Minus |
| arm_2R | 10798609..10798877 | 189..457 | 100 | <- | Minus |
| arm_2R | 10802353..10802396 | 145..188 | 100 | <- | Minus |
