FMO12280.5prime Sequence
1111 bp (985 high quality bases) assembled on 2012-08-29
> FMO12280.5prime
GTCGACATGGCGGACATAGTGTACCCCACCGGATGCCGGCCGCTGGTCGA
GGATTTGGGCACAGACGAGCTGATAAGGCGCCTCAAGACCCTCGCCAATG
TTCTGCAGACCATGGACCAGGACGACAATCTCTACCAGCAATACATACCA
TTGGCCCTCCATCTGCTGGACGACTTCTTTATGCAACATCCATCCCGTGA
TGTCCAGCTCTTAATCGCGTGCTGCGTGGCGGATGTCCTGCGGGTTTATG
CGCCAGAGGCTCCCTACAAAGAGCAAGATCAAATCAAAACTATATTTAAG
TTTTTTATCAAGCAACTGCACGGTCTGAAGGATCCGCGCGATCCCTCTTT
CAAGCGTTACTTCTATCTGCTGGAGAACCTTGCTTTTGTCAAGTCTTTTA
ATATGTGTTTCGAACTGGAGGACTGCCAAGAAATCTTCCAAGACCTGTTT
AGTACCATCTTCAAGATTGTCAATGACCAGCACAGTGTCAAGGTGACTAA
CTTTTTTCTAGATGTGCTAAGCCCGTTGATCACAGAAGCCGACAATCTGT
CGGTGGAATTGTTGGATCTCATTCTGATTAACATCGTAGAGCCGTACAAA
TCTAACACCAAGTTTGCCTGCCAATTAACAGAACAACTTCTCACTAAAAC
GGGCGATGCTCTCGAGTCCACCATCAAAATGTTCTTTAACCGTGCTCTGG
TCATGGATAAGTCAAACACAAAACTGTCCATTACAAACAAAATCTATGAT
ATCATTTACGAGCTTAACCGCATCAATGCACGCTTGTTGTGTTCAGTGCT
ACCTCAGCTGGAGAACAAACTGCTGTCCACGGACGATGCTGAGAGGCTAA
AGGCAACCACTCTCTTGTCTCGTATGTTCTCCGAAAGGACTCGCACTAGC
GAAAAGTACCCAACCTGTGAAATCTCTTTGGGCGCTCTGCGACATCACCG
AACAGTCGCATCAGTGTGTTCAGTCATCCATGCACTCTTGCTCATCCACC
AAGTCTCAGCACGATATCACGGAAATGCGCTCGAATTCCCGATCTGACGA
TGGTCGCCGAGGTGTATTGCTATTGGACTGCAGCGCGACTTCACCTCGTC
TCGAGCGCCCG
FMO12280.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:04:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| pds5-RB | 4929 | CG17509-RB | 529..1669 | 7..1111 | 4720 | 96.1 | Plus |
| pds5-RA | 4671 | CG17509-RA | 271..1411 | 7..1111 | 4720 | 96.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:04:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 12028715..12029102 | 86..473 | 1940 | 100 | Plus |
| 2R | 25286936 | 2R | 12029166..12029373 | 474..681 | 1025 | 99.5 | Plus |
| 2R | 25286936 | 2R | 12029431..12029600 | 681..850 | 820 | 98.8 | Plus |
| 2R | 25286936 | 2R | 12028575..12028655 | 7..87 | 405 | 100 | Plus |
| 2R | 25286936 | 2R | 12029664..12029810 | 851..986 | 210 | 90.5 | Plus |
Blast to na_te.dros performed on 2014-11-28 18:04:34 has no hits.
FMO12280.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-08-29 09:56:28 Download gff for
FMO12280.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pds5-RA | 258..1311 | 1..1035 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:42:49 Download gff for
FMO12280.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pds5-RA | 265..1318 | 1..1035 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:48:57 Download gff for
FMO12280.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pds5-RA | 265..1318 | 1..1035 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:48:57 Download gff for
FMO12280.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 12028569..12028655 | 1..87 | 96 | -> | Plus |
| 2R | 12028717..12029102 | 88..473 | 100 | -> | Plus |
| 2R | 12029166..12029373 | 474..681 | 99 | -> | Plus |
| 2R | 12029432..12029600 | 682..850 | 98 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:42:49 Download gff for
FMO12280.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 7916671..7916878 | 474..681 | 99 | -> | Plus |
| arm_2R | 7916074..7916160 | 1..87 | 96 | -> | Plus |
| arm_2R | 7916222..7916607 | 88..473 | 100 | -> | Plus |
| arm_2R | 7916937..7917105 | 682..850 | 98 | -> | Plus |
