FMO12281.5prime Sequence
1128 bp (1010 high quality bases) assembled on 2012-08-29
> FMO12281.5prime
GTCGACATGGTGAAGAAGAAAATAGACAACCGGATACGCGTGATGATCGA
GAATGGGGTCAAGCTGGGCCACCGAACCATGTTCATCGTCATCGGGGACA
AGGCGCGCGACCAGGTTCCCATTCTTTACGACATCCTGACCAAGTCGACG
GTCAAGGCGCGACCCACGGTCCTGTGGTGCTACAAGAACAAGGATGAGGC
CATCTCCAATCATGGCAAAAAGCGAGCAAAGAAGATTGCTGTGGGCAAAG
TGGATGTCAATGAGGCGGACCTGTTCGATTCATTTCGAGTGGCCACCACC
ATTCACGGCAGATACTACTCCGAGACGCACGCAGTCCTCGGACGAACCTA
CGGCGTGTGTGTGCTCCAGGACTTCGAGGCCCTGACCCCCAATCTTTTGG
CTCGAACTGTGGAAACGGTTGAGGGCGGCGGTCTGATCATCCTGCTGCTG
AAGACACTGCAGTCGCTGAAACAGTTGTACACCATGAGCATGGATGTGCA
CAAGCGATTCCGCACAGAAGCCCATCAGACGGTGACCTGTCGATTCAATG
AGCGACTCATTCTCTCCCTGGCGGACTGCAAGCGCTGTCTGGTGGTCAAC
GATGACCTCACCGTGCTGCCACTTAGCTCCAAGACCATCAACGTGGAGCC
AGTGAATCCCGCAGGCGCCGGTCGATCGCCCAACGAGGCTAGCCTCAAGG
AGCTGAGGAGAGCCTGCTCACAGTTCAACCAGCAGGAGCTCTGGTTAATC
TCTGCAAGACCTACGATCAGGCCAATGCCGTTGCCCAGTTCATTGAGGCG
CTGGTCGACAAGCAACTGAAGCCGCCCATGTCCTTAACAGCGGCTCGTGG
TCGTGGTAAATCGGCCGCCTCTGGGTCTGTCGATTGCCGCCGCCGTCGCC
TTTGGCTATGTGAACATCTACGTTACCTCACCGCATCCGGAAGAACTTAA
TCACGCTCTTTGAATTTGTGCTTCAAGGCTTCGAATGCCTTTGAAGTACC
AAGTAGCATGCTGAATTACACATTTTATACGCTCCACAATGCGACTACAA
AGGCGATAATAGAATTAAATATTACGAATAGCAGCAGCGAACAATTCATA
CATAGCTCCCAGCGAATACTCACTGCTG
FMO12281.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:04:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
l(1)G0020-RB | 3250 | CG1994-RB | 112..1234 | 6..1128 | 5010 | 97.3 | Plus |
l(1)G0020-RA | 3246 | CG1994-RA | 112..1234 | 6..1128 | 5010 | 97.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:04:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 8719456..8719903 | 657..210 | 2225 | 99.8 | Minus |
X | 23542271 | X | 8719070..8719395 | 984..658 | 1445 | 98.2 | Minus |
X | 23542271 | X | 8719963..8720166 | 209..6 | 1020 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 18:04:37 has no hits.
FMO12281.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-08-29 09:56:29 Download gff for
FMO12281.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(1)G0020-RA | 71..1200 | 1..1128 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:42:51 Download gff for
FMO12281.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(1)G0020-RA | 105..1234 | 1..1128 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:48:59 Download gff for
FMO12281.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(1)G0020-RA | 105..1234 | 1..1128 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:48:59 Download gff for
FMO12281.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 8718925..8719395 | 658..1128 | 93 | <- | Minus |
X | 8719456..8719903 | 210..657 | 99 | <- | Minus |
X | 8719963..8720170 | 1..209 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:42:51 Download gff for
FMO12281.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 8612958..8613428 | 658..1128 | 93 | <- | Minus |
arm_X | 8613489..8613936 | 210..657 | 99 | <- | Minus |
arm_X | 8613996..8614203 | 1..209 | 98 | | Minus |