Clone FMO12281 Report

Search the DGRC for FMO12281

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:122
Well:81
Vector:pMK33-CFH-BD
Associated Gene/Transcriptl(1)G0020-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO12281.5prime Sequence

1128 bp (1010 high quality bases) assembled on 2012-08-29

> FMO12281.5prime
GTCGACATGGTGAAGAAGAAAATAGACAACCGGATACGCGTGATGATCGA
GAATGGGGTCAAGCTGGGCCACCGAACCATGTTCATCGTCATCGGGGACA
AGGCGCGCGACCAGGTTCCCATTCTTTACGACATCCTGACCAAGTCGACG
GTCAAGGCGCGACCCACGGTCCTGTGGTGCTACAAGAACAAGGATGAGGC
CATCTCCAATCATGGCAAAAAGCGAGCAAAGAAGATTGCTGTGGGCAAAG
TGGATGTCAATGAGGCGGACCTGTTCGATTCATTTCGAGTGGCCACCACC
ATTCACGGCAGATACTACTCCGAGACGCACGCAGTCCTCGGACGAACCTA
CGGCGTGTGTGTGCTCCAGGACTTCGAGGCCCTGACCCCCAATCTTTTGG
CTCGAACTGTGGAAACGGTTGAGGGCGGCGGTCTGATCATCCTGCTGCTG
AAGACACTGCAGTCGCTGAAACAGTTGTACACCATGAGCATGGATGTGCA
CAAGCGATTCCGCACAGAAGCCCATCAGACGGTGACCTGTCGATTCAATG
AGCGACTCATTCTCTCCCTGGCGGACTGCAAGCGCTGTCTGGTGGTCAAC
GATGACCTCACCGTGCTGCCACTTAGCTCCAAGACCATCAACGTGGAGCC
AGTGAATCCCGCAGGCGCCGGTCGATCGCCCAACGAGGCTAGCCTCAAGG
AGCTGAGGAGAGCCTGCTCACAGTTCAACCAGCAGGAGCTCTGGTTAATC
TCTGCAAGACCTACGATCAGGCCAATGCCGTTGCCCAGTTCATTGAGGCG
CTGGTCGACAAGCAACTGAAGCCGCCCATGTCCTTAACAGCGGCTCGTGG
TCGTGGTAAATCGGCCGCCTCTGGGTCTGTCGATTGCCGCCGCCGTCGCC
TTTGGCTATGTGAACATCTACGTTACCTCACCGCATCCGGAAGAACTTAA
TCACGCTCTTTGAATTTGTGCTTCAAGGCTTCGAATGCCTTTGAAGTACC
AAGTAGCATGCTGAATTACACATTTTATACGCTCCACAATGCGACTACAA
AGGCGATAATAGAATTAAATATTACGAATAGCAGCAGCGAACAATTCATA
CATAGCTCCCAGCGAATACTCACTGCTG

FMO12281.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:04:38
Subject Length Description Subject Range Query Range Score Percent Strand
l(1)G0020-RB 3250 CG1994-RB 112..1234 6..1128 5010 97.3 Plus
l(1)G0020-RA 3246 CG1994-RA 112..1234 6..1128 5010 97.3 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:04:36
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 8719456..8719903 657..210 2225 99.8 Minus
X 23542271 X 8719070..8719395 984..658 1445 98.2 Minus
X 23542271 X 8719963..8720166 209..6 1020 100 Minus
Blast to na_te.dros performed on 2014-11-28 18:04:37 has no hits.

FMO12281.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-08-29 09:56:29 Download gff for FMO12281.5prime
Subject Subject Range Query Range Percent Splice Strand
l(1)G0020-RA 71..1200 1..1128 97   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:42:51 Download gff for FMO12281.5prime
Subject Subject Range Query Range Percent Splice Strand
l(1)G0020-RA 105..1234 1..1128 97   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:48:59 Download gff for FMO12281.5prime
Subject Subject Range Query Range Percent Splice Strand
l(1)G0020-RA 105..1234 1..1128 97   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:48:59 Download gff for FMO12281.5prime
Subject Subject Range Query Range Percent Splice Strand
X 8718925..8719395 658..1128 93 <- Minus
X 8719456..8719903 210..657 99 <- Minus
X 8719963..8720170 1..209 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:42:51 Download gff for FMO12281.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 8612958..8613428 658..1128 93 <- Minus
arm_X 8613489..8613936 210..657 99 <- Minus
arm_X 8613996..8614203 1..209 98   Minus