FMO12282.5prime Sequence
1080 bp (996 high quality bases) assembled on 2012-08-29
> FMO12282.5prime
GTCGACATGGGGGAACGTTTCTATAGATGCTGGCCGTTTGATAGAAACGG
AAAAGTCGAAAACATATATGTAATGGAACATTCCGATCCCGTGCCTTATC
AACAGCTATCGACATTATCGCCGACCACCGCACTATACTCGAACTTTAAC
AACTCTTTGGAAGCAGGAACCGCAGAAAGACTACGCCTTAATAAAACTGG
GTCACAGGTCCACAGCCTATATGTCGGCGACGGTCAAGTGCAAAATGCTT
CTGAACCCTTATCTTTTCCCAGCCACCTTAATCTGTACCAATATGTTCGT
ACCCCGGCAAACTTCACTATTAACAGCCGCAACCGATATATTCCGTACTA
TAACAATCGTTCCTACTCTGCTTCAACAACTGGTTTCCCTATAGCCAGTA
CTCCGCTGATCAGCAGCCATGCGCACATCCAAGACCAACAAGGTGCAGCG
TCTTATCAAACGATTGTTCCGCTTTATCAGACCGCAAGCCACTGTGCGCA
GCAACATACAACATTGGCATCGGTAGCTCCAATCGTGGACAATTCATTCG
TTGAAAGCACCACTTGCCCCATGGCCGGCATCACCTCTCACAACATCAAA
ATGAAAATGATTCCTCCCAATGTATTGTTGCCTTGCTCCACGCCTACGAC
AACCGCGGTGACCATCCAAAGGTCAACCGGAGAAGACGGTGGAGATAAAG
AAGGTCATACTTTTGCTAAGATTACGGAGATGAGCGATGCTGTTACTTTG
CAGATCACCAACTTGGACTACTCGCTGGACGAATCACATATACGCAGCTT
TCTACTTAATCAGCTTAAGCCCATTACGCCAGTTGTGTCACTTGTCTTCG
AGGGAAGCTCCTATGCCAAAGTCACTGTTCCAGATCTTTATTTCGCAAGC
AGGTCGTCTCCATTTGCACCGCAGATGATTTGGACACAACCGCATGCTGG
TCAGTTTATACTCGAAGATCCTCCCTTCACCGAAGTCAACACACTTCGGC
TGCCAGGTCGCAGGACTTTCTAAAGGGATGTCATTCAACCCCTCCCCATG
TATAAGATTATAGAACTATTTTCAGTCCGC
FMO12282.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:04:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17018-RC | 4395 | CG17018-RC | 178..1248 | 7..1078 | 4925 | 98 | Plus |
| CG17018-RE | 4815 | CG17018-RE | 596..1648 | 25..1078 | 4835 | 97.9 | Plus |
| CG17018-RF | 4749 | CG17018-RF | 552..1602 | 27..1078 | 4825 | 97.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:04:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 22363426..22364294 | 23..891 | 4330 | 99.9 | Plus |
| 2L | 23513712 | 2L | 22365199..22365318 | 897..1018 | 235 | 87 | Plus |
Blast to na_te.dros performed on 2014-11-28 18:04:07 has no hits.
FMO12282.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-08-29 09:56:21 Download gff for
FMO12282.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17018-RC | 167..1245 | 1..1080 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:42:30 Download gff for
FMO12282.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17018-RC | 171..1249 | 1..1080 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:48:43 Download gff for
FMO12282.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17018-RC | 171..1249 | 1..1080 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:48:43 Download gff for
FMO12282.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 22363430..22364294 | 27..891 | 99 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:42:30 Download gff for
FMO12282.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 22363430..22364294 | 27..891 | 99 | -> | Plus |
