FMO12286.5prime Sequence
1102 bp (958 high quality bases) assembled on 2012-08-29
> FMO12286.5prime
AGTCGACATGTTGGAGGACACCCAACTGGTGTGGGTGCGAGATGCCGCCG
AGGGCTATATACAGGGTAGGATCACCGAGATCGGCGCCAAGGAGTTCGAG
GTTACGCCCACCGATCGCAAGTATCCGAAGCGCACGTGTCACTTCGATGA
TATCCACTCTTCGTGCGATGGACCCCAGGATCACGATGACAACTGCGAAC
TCATGCTGCTCAACGAGGCCACATTTCTGGACAATTTGAAAACGCGTTAC
TACAAAGACAAGATCTACACATATGTGGCCAACATACTAATCGCCGTGAA
TCCGTATCGTGAGATAAAGGAGCTCTACGCACCCGATACCATCAAGAAGT
ACAATGGTCGTTCCCTGGGTGAACTGCCTCCTCATGTCTTTGCTATTGCG
GATAAAGCCATACGCGATATGCGGGTATACAAATTGTCCCAGTCGATCAT
CGTGTCCGGAGAGTCCGGCGCCGGCAAGACGGAGTCCACCAAATACCTGC
TCAAATACCTGTGCTATTCGCACGACAGTGCCGGTCCCATAGAGACCAAG
ATATTGGATGCCAATCCCGTGCTGGAGGCCTTTGGCAATGCCAAGACAAC
CAGAAACAACAACTCCTCGCGATTTGGAAAGTTCATTGAGGTGCACTACG
ATGCCAAGTGCCAGGTGGTCGGTGGTTACATATCGCACTACTTGCTGGAG
AAGAGTCGCATCTGTACGCAGAGCGCCGAGGAGCGAAACTATCATGTTTT
CTACATGCTCCTCGCCGGAGCTCCGCAGCAGCTGCGCGATAAGCTGAGCT
TGGGCAAGCCAGATGATTACAGGTATCTCTCTGGCTGCACACAGTACTTT
GCGAACGCCAAGACGGAGCAGCTAAATACCCGGGCTCACAAAAGTCGAAG
AATCAACCAGCCGAAGGGTTCCACTTAAGGATCCTGATTATCGATGATTA
TCAGCACTTCCACAACCTTTGACAAGGTCTTGTGTCGTCTGGAACTTCTC
GATTCGGAGAAGCTGGGTCATCTTATTCGCTGGTGGGCAGGCTGTGCCTC
CACTGGACTAACATTGCTTTCCAGGAGTATAACCGATGTATGTGCCCGGT
GG
FMO12286.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:04:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
jar-RN | 4505 | CG5695-RN | 344..1425 | 8..1102 | 4910 | 97.5 | Plus |
jar-RM | 5025 | CG5695-RM | 811..1892 | 8..1102 | 4910 | 97.5 | Plus |
jar-RL | 4361 | CG5695-RL | 102..1183 | 8..1102 | 4910 | 97.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:04:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 24257648..24257911 | 823..560 | 1320 | 100 | Minus |
3R | 32079331 | 3R | 24259054..24259241 | 195..8 | 925 | 99.5 | Minus |
3R | 32079331 | 3R | 24257971..24258138 | 560..393 | 825 | 99.4 | Minus |
3R | 32079331 | 3R | 24258196..24258325 | 398..269 | 650 | 100 | Minus |
3R | 32079331 | 3R | 24257396..24257584 | 1017..823 | 545 | 91.3 | Minus |
3R | 32079331 | 3R | 24258385..24258458 | 268..195 | 370 | 100 | Minus |
3L | 28110227 | 3L | 1326556..1326630 | 562..636 | 225 | 86.7 | Plus |
Blast to na_te.dros performed on 2014-11-28 18:04:46 has no hits.
FMO12286.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-08-29 09:56:31 Download gff for
FMO12286.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
jar-RH | 332..1423 | 1..1102 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:42:55 Download gff for
FMO12286.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
jar-RK | 334..1425 | 1..1102 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:49:06 Download gff for
FMO12286.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
jar-RL | 92..1183 | 1..1102 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:49:06 Download gff for
FMO12286.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 24257648..24257910 | 561..823 | 100 | <- | Minus |
3R | 24257971..24258132 | 399..560 | 100 | <- | Minus |
3R | 24258196..24258325 | 269..398 | 100 | <- | Minus |
3R | 24258385..24258458 | 195..268 | 100 | <- | Minus |
3R | 24259055..24259246 | 1..194 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:42:55 Download gff for
FMO12286.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 20083370..20083632 | 561..823 | 100 | <- | Minus |
arm_3R | 20083693..20083854 | 399..560 | 100 | <- | Minus |
arm_3R | 20083918..20084047 | 269..398 | 100 | <- | Minus |
arm_3R | 20084107..20084180 | 195..268 | 100 | <- | Minus |
arm_3R | 20084777..20084968 | 1..194 | 97 | | Minus |