Clone FMO12286 Report

Search the DGRC for FMO12286

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:122
Well:86
Vector:pMK33-CFH-BD
Associated Gene/Transcriptjar-RB
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO12286.5prime Sequence

1102 bp (958 high quality bases) assembled on 2012-08-29

> FMO12286.5prime
AGTCGACATGTTGGAGGACACCCAACTGGTGTGGGTGCGAGATGCCGCCG
AGGGCTATATACAGGGTAGGATCACCGAGATCGGCGCCAAGGAGTTCGAG
GTTACGCCCACCGATCGCAAGTATCCGAAGCGCACGTGTCACTTCGATGA
TATCCACTCTTCGTGCGATGGACCCCAGGATCACGATGACAACTGCGAAC
TCATGCTGCTCAACGAGGCCACATTTCTGGACAATTTGAAAACGCGTTAC
TACAAAGACAAGATCTACACATATGTGGCCAACATACTAATCGCCGTGAA
TCCGTATCGTGAGATAAAGGAGCTCTACGCACCCGATACCATCAAGAAGT
ACAATGGTCGTTCCCTGGGTGAACTGCCTCCTCATGTCTTTGCTATTGCG
GATAAAGCCATACGCGATATGCGGGTATACAAATTGTCCCAGTCGATCAT
CGTGTCCGGAGAGTCCGGCGCCGGCAAGACGGAGTCCACCAAATACCTGC
TCAAATACCTGTGCTATTCGCACGACAGTGCCGGTCCCATAGAGACCAAG
ATATTGGATGCCAATCCCGTGCTGGAGGCCTTTGGCAATGCCAAGACAAC
CAGAAACAACAACTCCTCGCGATTTGGAAAGTTCATTGAGGTGCACTACG
ATGCCAAGTGCCAGGTGGTCGGTGGTTACATATCGCACTACTTGCTGGAG
AAGAGTCGCATCTGTACGCAGAGCGCCGAGGAGCGAAACTATCATGTTTT
CTACATGCTCCTCGCCGGAGCTCCGCAGCAGCTGCGCGATAAGCTGAGCT
TGGGCAAGCCAGATGATTACAGGTATCTCTCTGGCTGCACACAGTACTTT
GCGAACGCCAAGACGGAGCAGCTAAATACCCGGGCTCACAAAAGTCGAAG
AATCAACCAGCCGAAGGGTTCCACTTAAGGATCCTGATTATCGATGATTA
TCAGCACTTCCACAACCTTTGACAAGGTCTTGTGTCGTCTGGAACTTCTC
GATTCGGAGAAGCTGGGTCATCTTATTCGCTGGTGGGCAGGCTGTGCCTC
CACTGGACTAACATTGCTTTCCAGGAGTATAACCGATGTATGTGCCCGGT
GG

FMO12286.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:04:47
Subject Length Description Subject Range Query Range Score Percent Strand
jar-RN 4505 CG5695-RN 344..1425 8..1102 4910 97.5 Plus
jar-RM 5025 CG5695-RM 811..1892 8..1102 4910 97.5 Plus
jar-RL 4361 CG5695-RL 102..1183 8..1102 4910 97.5 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:04:45
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 24257648..24257911 823..560 1320 100 Minus
3R 32079331 3R 24259054..24259241 195..8 925 99.5 Minus
3R 32079331 3R 24257971..24258138 560..393 825 99.4 Minus
3R 32079331 3R 24258196..24258325 398..269 650 100 Minus
3R 32079331 3R 24257396..24257584 1017..823 545 91.3 Minus
3R 32079331 3R 24258385..24258458 268..195 370 100 Minus
3L 28110227 3L 1326556..1326630 562..636 225 86.7 Plus
Blast to na_te.dros performed on 2014-11-28 18:04:46 has no hits.

FMO12286.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-08-29 09:56:31 Download gff for FMO12286.5prime
Subject Subject Range Query Range Percent Splice Strand
jar-RH 332..1423 1..1102 97   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:42:55 Download gff for FMO12286.5prime
Subject Subject Range Query Range Percent Splice Strand
jar-RK 334..1425 1..1102 97   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:49:06 Download gff for FMO12286.5prime
Subject Subject Range Query Range Percent Splice Strand
jar-RL 92..1183 1..1102 97   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:49:06 Download gff for FMO12286.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 24257648..24257910 561..823 100 <- Minus
3R 24257971..24258132 399..560 100 <- Minus
3R 24258196..24258325 269..398 100 <- Minus
3R 24258385..24258458 195..268 100 <- Minus
3R 24259055..24259246 1..194 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:42:55 Download gff for FMO12286.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 20083370..20083632 561..823 100 <- Minus
arm_3R 20083693..20083854 399..560 100 <- Minus
arm_3R 20083918..20084047 269..398 100 <- Minus
arm_3R 20084107..20084180 195..268 100 <- Minus
arm_3R 20084777..20084968 1..194 97   Minus