FMO12287.5prime Sequence
722 bp (713 high quality bases) assembled on 2012-08-29
> FMO12287.5prime
AGTCGACATGTTTGGATCCAAGCTGCGCTCCTGGATGGAGACGCATATTG
TGCGTCCGCGGAAGAAGGGCAGTAAACACAAGCAAGGGACCGTGGACGCA
GGCAGTTCTTGCGTGGGGAAGAAGGCGGGCACCTTACCAACACAGGGCAG
CAACCTAACTAGCCCGGTCCTGACCAGTAGCGGAAGCCACAGCATCGCCA
GTCCGGTGCGGAGGCGCGAGGTCTCCCCCATCCAGTGTCACCCACCCAGT
CGTCGATATGGCTGGCAATCCCCAGATGAAGATTCCTACGTCATAGCCTC
GCCCAAGTCGGACAATTTGCTTCACGCTCCGCACTGCTATCAGCCGCATC
AACCGCTCCAGCAGCCGTCGCACCACTTAAGCGTGCCCAATAGCAAGGAA
ACCTATGCGGAGAAATCGCCCACCAGGGTAAACTGCTCTTCGTCCTCCAT
ATCGTCGTTGTCCTGGTCAACGGGATCCAAGGAGCCCTCTTCTGGCAAAC
AAGCAATTTTTAGAGAGCAGTCCTTAAATGGGGAATACCACATCCCACCT
GAGGAGGAGGTGGAGTACGAGGAAGTTGGCGCTTTTGCTGCTTTCGGCAT
GCACCACCCATTGCAGAACAACAGCGCCCGCAGTCTGAAAAACTTAATGT
GCCGTGCGTCTAATCTACGATGAAAGAGCCAAGGCAAAGCAAGAATCATG
CTTCGTTACGGGTCGCCTGCTT
FMO12287.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:04:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12851-RD | 6450 | CG12851-RD | 801..1508 | 8..722 | 3355 | 98.6 | Plus |
| CG12851-RC | 5948 | CG12851-RC | 801..1508 | 8..722 | 3355 | 98.6 | Plus |
| CG12851-RB | 5254 | CG12851-RB | 801..1508 | 8..722 | 3355 | 98.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:04:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 24949924..24950397 | 242..722 | 2010 | 97.9 | Plus |
| 2R | 25286936 | 2R | 24949633..24949866 | 8..241 | 1170 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 18:04:49 has no hits.
FMO12287.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-08-29 09:56:32 Download gff for
FMO12287.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12851-RB | 790..1506 | 1..722 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:42:58 Download gff for
FMO12287.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12851-RB | 792..1508 | 1..722 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:49:08 Download gff for
FMO12287.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12851-RB | 792..1508 | 1..722 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:49:08 Download gff for
FMO12287.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 24949624..24949866 | 1..241 | 98 | -> | Plus |
| 2R | 24949924..24950397 | 242..722 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:42:58 Download gff for
FMO12287.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 20837147..20837389 | 1..241 | 98 | -> | Plus |
| arm_2R | 20837447..20837920 | 242..722 | 97 | | Plus |
