FMO12288.5prime Sequence
995 bp (842 high quality bases) assembled on 2012-08-29
> FMO12288.5prime
AGTCGACATGGCAACAACAACAACTACGCAGGCAGCAGGAGCTGCACCAG
CTCTCAATTTATTGCCCGCCAGCAATAACAATATAAATAATACACTGATC
AACAACAACAATAATAATAATAATACTAGTAACAGTAATAATAATAATAA
CAACGTTATAAGCCAGCCGATTAAAATACCGCTAACCGAGCGCTTCTCAT
CGCAAACATCGACGGGCTCGGCGGATAGCGGTGTAATTGTTTCCAGTGCA
TCGCAGCAGCAACTGCAGTTGCCACCACCACGCAGTAGCAGTGGATCGCT
GAGTCTGCCACAAGCGCCACCTGGCGGCAAGTGGCGGCAGAAGCAGCAGC
GCCAACAGTTGCTGCTCAGCCAGGACAGCGGCATCGAAAATGGTGTCACC
ACTCGTCCATCGAAAGCCAAGGACAACCAGGGTGCGGGAAAAGCCAGTCA
CAATGCCACAAGCTCGAAGGAGAGCGGCGCGCAGTCGAACAGCAGCAGCG
AGAGCCTGGGCAGCAATTGCTCCGAGGCCCAGGAGCAGCAGAGAGTAAGA
GCCTCCTCCGCTCTGGAGCTCAGCAGCGTGGACACTCCCGTGATCGTCGG
CGGTGTGGTCAGTGGAGGCAACAGCATCTTGCGCAGCCGCATTAAGTACT
AGAGTACGAACAGCACCGGAACCCAGGGATTCGATGTGGAGGATCGCATC
GATGAGGTGGATATCTGTGATGATGATGATGTCGACTGCGATGATCGCGG
ATCGGAGATCGAGGAGGAGGAGGAGGAGGAGGAGGGACGACGGCGTCAAT
GTGGACGACGATGTCAGGAGGCCGACAACAGTCGTGACAATCAGTCGGGC
ATTATATTATCCTCCAGAGCCTAAACCGAATGAGAGGAGGAGTTGATGAG
TGGATGCCAAGCCGAAAATCGACTTTTGCCACCTGATCAAGCCGAATTCA
GAGTGGCGGCGCCATGGCCCGCCAACTGATGGCCATAGCCTGGCC
FMO12288.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:04:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| sgg-RQ | 4499 | CG5-RQ | 438..1430 | 8..995 | 4390 | 96.8 | Plus |
| sgg-RP | 4750 | CG5-RP | 307..1299 | 8..995 | 4390 | 96.8 | Plus |
| sgg-RD | 4805 | CG2621-RD | 585..1577 | 8..995 | 4390 | 96.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:04:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 2659350..2660306 | 8..961 | 4145 | 97.2 | Plus |
Blast to na_te.dros performed 2014-11-28 18:04:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2330..2848 | 11..515 | 159 | 54.6 | Plus |
FMO12288.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-08-29 09:56:33 Download gff for
FMO12288.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sgg-RD | 580..1547 | 8..971 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:43:00 Download gff for
FMO12288.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sgg-RD | 585..1552 | 8..971 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:49:09 Download gff for
FMO12288.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sgg-RD | 585..1552 | 8..971 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:49:09 Download gff for
FMO12288.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 2659350..2660317 | 8..971 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:43:00 Download gff for
FMO12288.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 2553383..2554350 | 8..971 | 97 | | Plus |
