FMO12291.5prime Sequence
1130 bp (1033 high quality bases) assembled on 2012-08-29
> FMO12291.5prime
GTCGACATGGAAAAGCAGGAGGTCCTGGAATACGTGGCCAAGGTGGTCAG
GGCCCTAATCACGTCAGCTAAGCCGCCGGTTACGCTGCGGTCCATCGTCG
CAGATTACATGGAGATTGAGGGTGAGCCGATACCCTTTCGCAGGCTGGGC
TACTCGAATGACCAAGAGCTGCTTAAGGATTCGAATCAATTCAACTTTCA
CCAAAGCGGTAATCAGGTGTTCATCACAGCGAAGTATAACGCTAACACAG
AACATATTGTGCGTATGGTACGTCAGCAGAAGACCAGCAAGTCCACAAGC
TTATCGAAGCCCACTCCAATTGCCCAGAAGCCCAAGCCAATTGCCCAGAA
GCACACTCACGGCAATAAGTACCACTACCAGCAACGGAATAAGCAGCCGA
ATCATCAGCCGGATCAAGAAATAGGAAGAGCAGCTAAGTGTGAGAATCAG
GCTATAGCCGAGCATAAACAAGATCTAACGGGCATCATAACCCAAGAGCT
GTTTGAAAGTTTCAATAATATTCAAGGTCCGTTTTCGGAAAACCTGCAGG
TTTTCAACAAAAATCCAGAATATATCACAAGGCGAAAGAAAGAGCTTAAG
AAAGAAGACGATCTAGATCGTGGTCAAATAACGAAGGAAGTCGCTAGGGA
AAAACAGAAGGAAAAAGAAACCCGCGATCGGGCTGTGACGGAAACGATCT
TCGTAACAATTGAGAACAAAAAGGCACCAGTCATGAATGGACATGGACCA
AGGCACGTTAAAGTGGCTAACGGACAAGACAAACACAATGACGGCAAACC
TCCGCTGCGTGCCATACTGGGCAACAGTGCTTCGCAGCGCCAGCAAGATA
CAAGCACCGTCTATCACAGCCCTGAATCCTCATTCAAGCGGCCACGTCAT
CCGCGAGTAATGTACCCTGATCACCAGCGCACCACGGGCCGTCTCTGTGA
ATCACAGATTGAAAGTAACGCCGCAATCGGATGCCACCCCACGCCAGCGG
TAGCGCCCATCACGCCGCCAGCTTCGCCGGATACGCTTCAACGAACACCG
CCCGCCTTAAGCGACGTTACAAAGAAGATATCCACGTAGGTTCAGCTGAA
ACCAGCCATTCGTTACAAATCAAGTAAGGG
FMO12291.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:04:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8920-RD | 3272 | CG8920-RD | 177..1287 | 7..1121 | 5190 | 98.1 | Plus |
| CG8920-RB | 4005 | CG8920-RB | 177..1287 | 7..1121 | 5190 | 98.1 | Plus |
| CG8920-RF | 3753 | CG8920-RF | 135..1035 | 217..1121 | 4140 | 97.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:04:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 20321675..20322578 | 214..1121 | 3995 | 97.5 | Plus |
| 2R | 25286936 | 2R | 20319813..20320024 | 7..218 | 1060 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 18:04:55 has no hits.
FMO12291.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-08-29 09:56:34 Download gff for
FMO12291.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8920-RD | 143..1266 | 1..1130 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:43:02 Download gff for
FMO12291.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8920-RB | 170..1293 | 1..1130 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:49:11 Download gff for
FMO12291.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8920-RB | 170..1293 | 1..1130 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:49:11 Download gff for
FMO12291.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 20319806..20320022 | 1..216 | 98 | -> | Plus |
| 2R | 20321678..20322584 | 217..1130 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:43:02 Download gff for
FMO12291.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 16207311..16207527 | 1..216 | 98 | -> | Plus |
| arm_2R | 16209183..16210089 | 217..1130 | 97 | | Plus |
