FMO12292.5prime Sequence
1144 bp (1008 high quality bases) assembled on 2012-08-29
> FMO12292.5prime
GACATGTTTGGTTTATGCGAAAAGTTGATGACACATTTCGCTGTCATTTT
GACCGCATTTTCCTTCTCCCAGCCGCTGTTGTTGTTGCTGATTTGCGGGC
CGCATGGCGGCACCTTCCCCTCGACATCCATCCACTGGGCGGAGGCCTCG
GCGGCGGATGAAGCTGTCGGCAAGTGGGCCACCCAATTTGGCGACGAGCT
GTTCGCGCTGGCGCAGAAGATCACCAAGTCGCAGGAGATCAAGGAGAAGT
ACAAGGAGTACAATGCCCGCGTGGAGCTGAAGAACGGCACCGAACTGATT
AAGTCAATAACGAAAAATGTGGGCAGAATGCTGGCGAGGAAAATGGACGC
GGTGCGGTGCATCCAGGAGCGTGCGGAATATGTGAACGAGAACTTTGAGT
TTAATCTCACCTATGCGCTTCAGAACTTCACCTACTTTTCTAGCAAGTAT
TCGACCTTTAATGGAAACAGTTCCGAGGAGCTGGAACCTAATGAGGCTGA
GTTCGCCTGGATGTATCGGAATATGGAGTTGAATCCGGACACACACTTCT
ACAATACGCCAGTGGACACGGAACACAGTTCGGTGCACGTGCCATCGAAT
GATATGGGATCGATCGGAACGTGTCCTGAAGACCATAATGTGGTCCGAGC
ATCTGGACGAGGTGTTCCGGCAGAATTACCAATCCGATCCGGCCTTGTCG
TGGCAGTACTTTGGCTCCGATACGGGAATCCTGCGCCACTATCCGGCTGC
CCAATGGACTGATACCAGACCAAATCGGGATGATGCCGACACCTATGATT
GCCGCAAGAGGTCTTGGTACATTGAGACAGCCACGTGTTCAAAGGACATT
GTCATCCTGCTGGATCATTCGGGTTCAATGACGGGCTTCCGGCATCATGT
GGCAAAGTTTACCATTCGCAGCATCCTAGACACTTTCTCCAACATTGATT
TTCTTCACATTCTGCGGTACTCGAGTTGAGGTAATTGACATAATACCCTG
CTTCAATGGGAGCTCTCGTTCAGGCGACAACCGAAAACATAGAGTCTTCA
ACAGCAATCGAAACAGGTGACGATCTGAGATTGCTAATCTCACCTGCCTA
CGAACGCCTCCACTGCTGCAAAATCTACGAATGTCGCATGGTAC
FMO12292.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:05:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG42817-RB | 5790 | CG42817-RB | 600..1738 | 4..1130 | 5115 | 97.6 | Plus |
| CG42817-RA | 4919 | CG42817-RA | 600..1738 | 4..1130 | 5115 | 97.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:04:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 16235620..16236496 | 165..1044 | 4115 | 98.6 | Plus |
| 2L | 23513712 | 2L | 16232074..16232234 | 4..164 | 805 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 18:04:58 has no hits.
FMO12292.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-08-29 09:56:34 Download gff for
FMO12292.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42817-RA | 595..1715 | 1..1112 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:43:04 Download gff for
FMO12292.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42817-RA | 597..1717 | 1..1112 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:49:13 Download gff for
FMO12292.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42817-RA | 597..1717 | 1..1112 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:49:13 Download gff for
FMO12292.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 16232071..16232234 | 1..164 | 98 | -> | Plus |
| 2L | 16235620..16236576 | 165..1112 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:43:04 Download gff for
FMO12292.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 16232071..16232234 | 1..164 | 98 | -> | Plus |
| arm_2L | 16235620..16236576 | 165..1112 | 97 | | Plus |
