FMO12294.5prime Sequence
1138 bp (977 high quality bases) assembled on 2012-08-29
> FMO12294.5prime
GTCGACATGGGTCGCAGCAACTTCAGTTCGCATCACCAGCAGACTCATGT
GAGGCGCCACCGCAATGCTGGCGGTGCCACATCAAAATCACCAAACGCAG
CCAAAACTTCGCCAACAATGACGGACTACCTGTCGCTGCACTCGCGACTC
GCCCAGGTGGGCCAGGAGCACCTGCTCAAGTTCTGGCCGGAACTAACGAA
TGACGAACGCATCGACCTGGTGCGGGACATCGAGGAGCTGAATCTGGACG
AGATCAAGCTGTATTTCGACCGCGCCACGGTCTCAATGAACGAGAATGGC
ATCAAGCTGGACGATCGCCTGCAGCCGCTGCCCGAGGGCAAGCTAATCTC
CATTGCCAGGGCGCCGCTGGAGAAATTGGACGCCTACCGAGACGAGGGTC
TCCTCCAGATCAGCAACGGACATGTCGCTGTGCTGCTTATGGCAGGCGGA
CAAGGCACACGACTTGGCTTCGATCATCCCAAGGGAATGTACGATGTGGG
ACTGCAGTCTCGAAAGACCCTGTTCCGCATTCAGGCCGAGCGAATCCTGA
AGCTGGAGGAGCTCGCCCAAGAGGCGAATGGAAAACGTGGACACATCACT
TGGTACATCATGACGTCGGAGCACACGGTGCAACCCACATACGACTACTT
TGTGGCCAATAACTTCTTTGGCCTGAAGGCGGAGAACGTACTGTTGTTCG
AGCAGGGATCACTGCCGTGCTTTGAATACGATGGACGCATCATTCTGGAC
GAAAAGCATCGGGTGGCGCGTGCGCCGGACGGCAACGGAGGAATCTATCG
GGCTATGAAGCGCCAGGGGATTCTGGACGATATGCAGAAGCGTGGTGTCT
TATATCTGCATGCCCATAGCGTGACACATCCTGATCAAGGGGCCGATCCC
GTTTTTTATCGGCTACTGCGTGCAGGAGAAGGCCGACTGCGCCGCTAAGG
TGGTGGAAAAGCAGCTCCCAACGAAGCTGTGGGCGTGGTGTGCCATTTGT
CGATGCCAAATACCAGTGGGTGGAGGTACAGTCGGAAATTCTCGCCAAAC
AGCCGGAGAATGGCGCATTTCAGACCGGCAGCTGACTTCATGCCTGCCAC
ATTTTGCATTCATTCCTCAGCTCGACCTTCTGCCGAAA
FMO12294.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:04:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mmy-RA | 2030 | CG9535-RA | 214..1335 | 7..1130 | 4940 | 97 | Plus |
| mmy-RD | 2064 | CG9535-RD | 214..1316 | 7..1130 | 4645 | 95.3 | Plus |
| mmy-RB | 1921 | CG9535-RB | 113..1173 | 68..1130 | 4635 | 96.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:04:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 6469388..6469961 | 1025..453 | 2465 | 97.6 | Minus |
| 2L | 23513712 | 2L | 6471327..6471715 | 455..67 | 1945 | 100 | Minus |
| 2L | 23513712 | 2L | 6473631..6473691 | 67..7 | 305 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 18:04:41 has no hits.
FMO12294.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-08-29 09:56:29 Download gff for
FMO12294.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mmy-RA | 223..1259 | 1..1039 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:42:52 Download gff for
FMO12294.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mmy-RA | 208..1244 | 1..1039 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:49:02 Download gff for
FMO12294.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mmy-RA | 208..1244 | 1..1039 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:49:02 Download gff for
FMO12294.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 6469364..6469959 | 455..1052 | 96 | <- | Minus |
| 2L | 6471328..6471714 | 68..454 | 100 | <- | Minus |
| 2L | 6473631..6473697 | 1..67 | 95 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:42:52 Download gff for
FMO12294.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 6469364..6469959 | 455..1052 | 96 | <- | Minus |
| arm_2L | 6471328..6471714 | 68..454 | 100 | <- | Minus |
| arm_2L | 6473631..6473697 | 1..67 | 95 | | Minus |
