FMO12295.5prime Sequence
1121 bp (1025 high quality bases) assembled on 2012-08-29
> FMO12295.5prime
GTCGACATGGCTGGAAGAATTACAATCAACGGCACCAGCCACGAAGTCAA
CCTGTCTGCCCTGCCGGCGGATATCTCGCTGAACACTTTCATCCGAGAGT
ATGCCGGATTAACGGGCACGAAGTTCATGTGCCAGGAGGGCGGATGCGGC
GTCTGCGTCTGCACCCTGACTGGGATTCATCCGGAGACCGGAGAGCTGCG
CACCTGGGCGGTCAACTCGTGCCTCACGCTGCTGAATACGTGCTTGGGCC
TGGAGGTGACCACTTCGGAGGGATTGGGCAACAAGCGGGTCGGCTACCAT
GCCATCCAGCAGCGACTGGCCAAGATGAACGGCACCCAGTGCGGCTACTG
CTCGCCGGGAATCGTGATGAACATGTACGGCCTGCTGAAGTCCAAGGGCG
GCAAGGTCACAATGGAGGAGGTGGAGAACTCCTTTGGAGGCAACATCTGT
CGCTGCACTGGCTATCGTCCCATTCTTGACGCCATGAAATCCTTTGCCGT
GGACAGCAACATCCAGGTACCAGCTGAGTGCATTGACATTGAAGACCTGA
GCACCAAAAAGTGTCCCAAGACCGGCCAAACCTGCTCCGGCAGCTGCAAG
AAGCAGCAGCCCAAGGGCAGCCAACTGTATCCGGATGGCAGCCGCTGGAG
TTGGCCAGTGAGTCTGGGTGACCTCTTTGCCGCTCTGCAGGGAGCAGTCA
AAGAGAAGCTGCCCTACATGCTGGTGGCTGGAAATACGGCCCACGGCGTC
TACAGACGTAGTCCGGACATAAAGGCATTCATCGATGTTTCCGGCTTGGC
GGAGCTCAAGGGTCATAAGCTGAGCGCAGATAACTCATCCCTAACTCTCG
GTTGAAATCTGAGTCTCAGTGAAACCATGGAGCTGTGTCGCCAGTTGGAG
AACACGAAGGCTTCGAGTATTTGTCTCAGTGTGGCAACACCTCGATTGGA
TCGCTAATGTCCAGTGCGCATTGCTGGCACCTTGGCGGGCCATCTGTCCA
TCAGCATGCCCACCCGGAGTTCCCCTCGGATGTGTTCATTCGTCTTGAGC
CCTAATGCCTCAAGTGATGTCCAGAAGGCGGGTGACAGCACGAACTGTCA
GCTTGCCAGCTATCTGCTCTC
FMO12295.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:02:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| AOX1-RA | 4228 | CG18522-RA | 218..1336 | 7..1116 | 5130 | 97.9 | Plus |
| AOX3-RA | 4163 | CG6045-RA | 330..837 | 60..585 | 725 | 76.9 | Plus |
| AOX4-RA | 3832 | CG18516-RA | 237..545 | 200..508 | 635 | 81.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:02:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 15535630..15536558 | 970..45 | 4480 | 99.6 | Minus |
| 3R | 32079331 | 3R | 15546304..15546670 | 585..219 | 650 | 78.5 | Minus |
| 3R | 32079331 | 3R | 15552140..15552356 | 508..292 | 605 | 85.3 | Minus |
| 3R | 32079331 | 3R | 15541759..15542001 | 510..268 | 420 | 78.2 | Minus |
| 3R | 32079331 | 3R | 15535451..15535518 | 1039..973 | 275 | 97.1 | Minus |
| 3R | 32079331 | 3R | 15546768..15546870 | 162..60 | 230 | 81.6 | Minus |
| 3R | 32079331 | 3R | 15537036..15537075 | 46..7 | 200 | 100 | Minus |
| 3R | 32079331 | 3R | 13033879..13033951 | 307..379 | 185 | 83.6 | Plus |
Blast to na_te.dros performed on 2014-11-28 18:02:26 has no hits.
FMO12295.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-08-29 09:55:55 Download gff for
FMO12295.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18522-RA | 210..1250 | 1..1039 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:41:27 Download gff for
FMO12295.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18522-RA | 214..1254 | 1..1039 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:47:47 Download gff for
FMO12295.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| AOX1-RA | 214..1254 | 1..1039 | 98 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:47:47 Download gff for
FMO12295.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 15535451..15535518 | 973..1039 | 97 | <- | Minus |
| 3R | 15535628..15536556 | 47..972 | 99 | <- | Minus |
| 3R | 15537036..15537077 | 1..46 | 91 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:41:27 Download gff for
FMO12295.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 11361173..11361240 | 973..1039 | 97 | <- | Minus |
| arm_3R | 11361350..11362278 | 47..972 | 99 | <- | Minus |
| arm_3R | 11362758..11362799 | 1..46 | 91 | | Minus |
