FMO12301.5prime Sequence
963 bp (962 high quality bases) assembled on 2012-10-09
> FMO12301.5prime
AGTCGACATGGAGAGTGAGCAGCCAGCGGCTGTAAAGGCTTCAGCTCCAA
TTGAAGAGCCACAATCCACCGAAACAGCTGTTGAATTGGGGAAACATAGC
ACCTTGAAGGCAGACTTATCAATAGATAAGTTGGAAACAGCGACAACAGA
AGCTACGAATGCCGTAGTAGAACCAGTAGAAATGGAGCAGCAGGTGGAAA
ATGAACTGGTAAATGAGTCAACACAAGCCATGACATCGACCACAACCCAG
GAAAAGGTGGTGGGTTCAGTGAATAATCTTGTAGAGGAGCAACAGTGTGT
GGAAATGGAATTCGAAACATCATCAGATCTCGTGGTCCAGGGAAGTCCAT
CGGAAGAATCCAAAAAAGTTGCCTCTGACGCTTCTGCTACTGTGACCGCA
CCTCAAGTTCAGCCCGCTCCACATGTTGATTCAAGCCCTCAAGCAAGTGG
CCTCAGTCTGTTGGCTGCCTACAGCTCTGATGACTCGGATGATGAGAAAG
TCACTCCAGTGCAGAACGGCGACAACGATGTGATTGAAGTTCCAGTTACG
GACCCCGCATCCTCCACCACCGCATATCGTCCAGTTGTAGCTGTGAGCTC
GGATGACGAGAGCTCAAAGAGCAGCAGCAGCAGCAGTGACTCAGACTCCG
ATTCCGAAGGAGAATACCTCACCGTACTTCGGAAGAAGATTGACAAAAGA
ATCAACACCGTGGATTGTGACGAGGATGACGAGGACTTTGATGAAGATGG
GGCTACAGGAGATCGGTCTCGTCGTCGCCAGCCCCCGAAAGTACGAGGAG
AAATGCTCCTTGATGACCTTCCGCCTATTCATCAGCTAGAGATTACTGTA
CCCCGAGGATGATTGCGTTGAACTTGGCAAAGTTCAGTCCATCGTGGATC
AGCTTGTTTTGGTTTCCGTGCTGCCGAATTCCATGCTATTCAATCTCGAC
ACCGTTTTGTTTC
FMO12301.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:08:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10341-RA | 1873 | CG10341-RA | 121..1074 | 7..961 | 4720 | 99.7 | Plus |
| CG10341-RC | 1870 | CG10341-RC | 121..1071 | 7..961 | 4665 | 99.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:08:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 18699033..18699846 | 147..961 | 3995 | 99.6 | Plus |
| 2L | 23513712 | 2L | 18698834..18698976 | 7..149 | 715 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 18:08:19 has no hits.
FMO12301.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-10-09 09:33:14 Download gff for
FMO12301.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10341-RB | 65..1023 | 1..963 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:45:20 Download gff for
FMO12301.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10341-RA | 115..1075 | 1..963 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:51:10 Download gff for
FMO12301.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10341-RA | 115..1075 | 1..963 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:51:10 Download gff for
FMO12301.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 18698828..18698976 | 1..149 | 97 | -> | Plus |
| 2L | 18699036..18699847 | 150..963 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:45:20 Download gff for
FMO12301.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 18698828..18698976 | 1..149 | 97 | -> | Plus |
| arm_2L | 18699036..18699847 | 150..963 | 99 | | Plus |
