FMO12302.5prime Sequence
1011 bp (879 high quality bases) assembled on 2012-10-09
> FMO12302.5prime
GTCGACATGGACAAGTTTCTGTTGCGCAATCCCACGTGGAAGACGAAGAC
GTACGGATCGGTCGTGGCCAGTTCCGCCGCAGCTGCCAAGAAAACAGCGG
CGTCATCGACCCGCCGACCGTTGCACGATTCAAATCTGGGCGACTTCAGG
TCCAAAGCAGCGGCACCGTCTCCCAAATCTCTATCCCAGGCCCCGGCAGA
TGACCAGGCGGCCAGGGATCGGCTGATGCTCAAGCCGGCATTAGCCGTCT
CCAAAGCGATCAGCCAGCACCGCTCCGAGTTCCACCAGGACGAGAACGAG
GCGGGAGCAGAAGGATCTGCAGCAAAACCAGATCCACCCATCGGAGCAGC
CACGCCAACCAGGCAGGAAGGACACTGGGCCCGACTGCAGCAAGTTCTCA
ACAGCCCCAACGCTGCACTCCGATTACGCGCCATTCGTGCATTAAAAAGC
CCCACCAAGTCTGCATACAATACCTTCGATGTGCCTTTAGCCGAACAAAG
CATCATCACGATGGAAGAACGCAATCCCCAGGAGCCGCCCTCCCTCCCCG
AGTTGCTCAAGGACATAGTCGTATATGTGGAGGTGCGAACTGGAAACGAC
AATCGCTCTGAGGGCGTAAAATCAATTATTGCCAAGATGGGAGCCCAGGT
CAAAGATCGCCTAACGCGAACCACCACACACGTTGTCTTCAGGGATGGCC
TGCTCTCCACCTATAAAAAGGCCACCGAGTGGAAATATACCAGTCGTTTT
CCATTCTGTGGATTGAAGCTTGCAAGGTGCAGCTGAAATATGCGATCCCA
AGCATTTCCAATCAGCATATACGCATGTACGAGTATCCCGAGCTCTTTTG
TAAAATGCCGCGCGTTAAGTTCATGCAGCCCGACTCGTAGTTGAATCACC
GACCCCGCAACGCAAAGAACACTCACATCTCAAGGACACGAGCTAGATCG
ACTATCAACGTAGTCCAGACGGTAACTTCACATCACCACACAAGAATGAA
TCGCGCTTTTC
FMO12302.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:08:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
MCPH1-RD | 3360 | CG42572-RD | 145..1149 | 6..999 | 4355 | 96.5 | Plus |
MCPH1-RB | 2872 | CG42572-RB | 145..1149 | 6..999 | 4355 | 96.5 | Plus |
MCPH1-RC | 3149 | CG42572-RC | 126..938 | 198..999 | 3395 | 95.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:08:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 11903165..11903413 | 446..198 | 1230 | 99.6 | Minus |
2R | 25286936 | 2R | 11902619..11902840 | 668..447 | 1095 | 99.5 | Minus |
2R | 25286936 | 2R | 11903581..11903774 | 199..6 | 970 | 100 | Minus |
2R | 25286936 | 2R | 11902358..11902551 | 860..668 | 685 | 95.9 | Minus |
2R | 25286936 | 2R | 11899013..11899063 | 910..860 | 195 | 92.2 | Minus |
Blast to na_te.dros performed on 2014-11-28 18:08:22 has no hits.
FMO12302.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-10-09 09:33:15 Download gff for
FMO12302.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
MCPH1-RD | 146..1077 | 1..929 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:45:21 Download gff for
FMO12302.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
MCPH1-RB | 140..1071 | 1..929 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:51:11 Download gff for
FMO12302.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
MCPH1-RB | 140..1071 | 1..929 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:51:11 Download gff for
FMO12302.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 11903165..11903411 | 200..446 | 99 | <- | Minus |
2R | 11903581..11903779 | 1..199 | 99 | | Minus |
2R | 11902619..11902840 | 447..668 | 99 | <- | Minus |
2R | 11902358..11902550 | 669..860 | 95 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:45:21 Download gff for
FMO12302.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 7789863..7790055 | 669..860 | 95 | <- | Minus |
arm_2R | 7790124..7790345 | 447..668 | 99 | <- | Minus |
arm_2R | 7790670..7790916 | 200..446 | 99 | <- | Minus |
arm_2R | 7791086..7791284 | 1..199 | 99 | | Minus |