Clone FMO12302 Report

Search the DGRC for FMO12302

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:123
Well:2
Vector:pMK33-CFH-BD
Associated Gene/TranscriptMCPH1-RB
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO12302.5prime Sequence

1011 bp (879 high quality bases) assembled on 2012-10-09

> FMO12302.5prime
GTCGACATGGACAAGTTTCTGTTGCGCAATCCCACGTGGAAGACGAAGAC
GTACGGATCGGTCGTGGCCAGTTCCGCCGCAGCTGCCAAGAAAACAGCGG
CGTCATCGACCCGCCGACCGTTGCACGATTCAAATCTGGGCGACTTCAGG
TCCAAAGCAGCGGCACCGTCTCCCAAATCTCTATCCCAGGCCCCGGCAGA
TGACCAGGCGGCCAGGGATCGGCTGATGCTCAAGCCGGCATTAGCCGTCT
CCAAAGCGATCAGCCAGCACCGCTCCGAGTTCCACCAGGACGAGAACGAG
GCGGGAGCAGAAGGATCTGCAGCAAAACCAGATCCACCCATCGGAGCAGC
CACGCCAACCAGGCAGGAAGGACACTGGGCCCGACTGCAGCAAGTTCTCA
ACAGCCCCAACGCTGCACTCCGATTACGCGCCATTCGTGCATTAAAAAGC
CCCACCAAGTCTGCATACAATACCTTCGATGTGCCTTTAGCCGAACAAAG
CATCATCACGATGGAAGAACGCAATCCCCAGGAGCCGCCCTCCCTCCCCG
AGTTGCTCAAGGACATAGTCGTATATGTGGAGGTGCGAACTGGAAACGAC
AATCGCTCTGAGGGCGTAAAATCAATTATTGCCAAGATGGGAGCCCAGGT
CAAAGATCGCCTAACGCGAACCACCACACACGTTGTCTTCAGGGATGGCC
TGCTCTCCACCTATAAAAAGGCCACCGAGTGGAAATATACCAGTCGTTTT
CCATTCTGTGGATTGAAGCTTGCAAGGTGCAGCTGAAATATGCGATCCCA
AGCATTTCCAATCAGCATATACGCATGTACGAGTATCCCGAGCTCTTTTG
TAAAATGCCGCGCGTTAAGTTCATGCAGCCCGACTCGTAGTTGAATCACC
GACCCCGCAACGCAAAGAACACTCACATCTCAAGGACACGAGCTAGATCG
ACTATCAACGTAGTCCAGACGGTAACTTCACATCACCACACAAGAATGAA
TCGCGCTTTTC

FMO12302.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:08:22
Subject Length Description Subject Range Query Range Score Percent Strand
MCPH1-RD 3360 CG42572-RD 145..1149 6..999 4355 96.5 Plus
MCPH1-RB 2872 CG42572-RB 145..1149 6..999 4355 96.5 Plus
MCPH1-RC 3149 CG42572-RC 126..938 198..999 3395 95.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:08:21
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 11903165..11903413 446..198 1230 99.6 Minus
2R 25286936 2R 11902619..11902840 668..447 1095 99.5 Minus
2R 25286936 2R 11903581..11903774 199..6 970 100 Minus
2R 25286936 2R 11902358..11902551 860..668 685 95.9 Minus
2R 25286936 2R 11899013..11899063 910..860 195 92.2 Minus
Blast to na_te.dros performed on 2014-11-28 18:08:22 has no hits.

FMO12302.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-10-09 09:33:15 Download gff for FMO12302.5prime
Subject Subject Range Query Range Percent Splice Strand
MCPH1-RD 146..1077 1..929 97   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:45:21 Download gff for FMO12302.5prime
Subject Subject Range Query Range Percent Splice Strand
MCPH1-RB 140..1071 1..929 97   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:51:11 Download gff for FMO12302.5prime
Subject Subject Range Query Range Percent Splice Strand
MCPH1-RB 140..1071 1..929 97   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:51:11 Download gff for FMO12302.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 11903165..11903411 200..446 99 <- Minus
2R 11903581..11903779 1..199 99   Minus
2R 11902619..11902840 447..668 99 <- Minus
2R 11902358..11902550 669..860 95 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:45:21 Download gff for FMO12302.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 7789863..7790055 669..860 95 <- Minus
arm_2R 7790124..7790345 447..668 99 <- Minus
arm_2R 7790670..7790916 200..446 99 <- Minus
arm_2R 7791086..7791284 1..199 99   Minus