FMO12304.5prime Sequence
758 bp (758 high quality bases) assembled on 2012-10-09
> FMO12304.5prime
AGTCGACATGCCAAACCAGATGAGAGTGCTGGACTTTGGCGATGGATCGG
TGCCCATCCAGCTGGACTATCCAGATTCGAAGATCTTCAGCAAGTGCAGT
AGCTACGGCGATCGTGTTCCGGGTACCCATTGGAACGAAATCACAGTGCA
CCATAAGGGCCGCCTGGAATACTCGCCAAATCCGGAGCAGATAATCCTGG
ATGCCTTATACCAGGCGATAGACGGTGCGGACTTCTTTCCGGTGTTCTAC
CAGCGTGGGAAGAACATGGATACCATGCTGGTCAGGAACTGCAAGGCGGC
CATTGATAAGCTCTTCAAACAGCGGCTGTCCATTAATCTGAAAGGAGGCG
CCTCCATACCCATCAGTATTCAACTGGGCGTAGCCCAGTACCAAAGGCAC
CAGATAACTCCAACGTTCCACATCGCACGGGTGGTCACCAGACTGATGAA
ACAATTGATTCAAAGGGACGGTGTGGATGGGCTACTTAATCTGGACAACT
TTGGGAGTCATCCGGAGTTTAAAAACCTTGTGGTAAGCCTGGGCAATCCG
AGCATCCTGATGAACGTGTGCCAGGTAATACACAATGATGACAATGAACG
CTTTCGGCTGAACGGATTTATATTGTCTAACAACCCGCATTCGGGATATA
CGGCCCTTGACGCTACTCGCCAATGTGGACTACGCCCCTGCTCGACTTAA
GGGGAACAAGATTAATCCGCCGAACGTTTGTGCCGCGCTCTATACAATTT
CCGGGCCC
FMO12304.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:08:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| nxf2-RC | 2723 | CG4118-RC | 98..847 | 8..757 | 3585 | 98.9 | Plus |
| nxf2-RB | 2771 | CG4118-RB | 98..847 | 8..757 | 3585 | 98.9 | Plus |
| nxf2-RA | 2863 | CG4118-RA | 190..939 | 8..757 | 3585 | 98.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:08:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 16579143..16579593 | 704..252 | 2165 | 99.6 | Minus |
| 3L | 28110227 | 3L | 16579652..16579897 | 253..8 | 1230 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 18:08:27 has no hits.
FMO12304.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-10-09 09:33:16 Download gff for
FMO12304.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| nxf2-RB | 75..828 | 1..758 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:45:25 Download gff for
FMO12304.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| nxf2-RA | 186..939 | 1..758 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:51:14 Download gff for
FMO12304.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| nxf2-RA | 186..939 | 1..758 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:51:14 Download gff for
FMO12304.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 16579652..16579900 | 1..253 | 98 | | Minus |
| 3L | 16579136..16579591 | 254..710 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:45:25 Download gff for
FMO12304.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 16572236..16572691 | 254..710 | 99 | <- | Minus |
| arm_3L | 16572752..16573000 | 1..253 | 98 | | Minus |
