FMO12306.5prime Sequence
852 bp (827 high quality bases) assembled on 2012-10-09
> FMO12306.5prime
AGTCGACATGGCAGCGAAGCGGGCGGAAAGTCCGGAGAAGCGGGCTAGTC
CGGAGCCCACTCTGCGTGGACTAACCACAAAGGTGGCGCTGCGGCGTCTA
CATGAGGAGATTGAAAAACGGGTGCAACTGGAGCACGAGCGGCAATACGG
AGCGGAGAGCCCCTATCGAAAATTGCGGGCGGCCTTTGTGAAGCGGTACG
ATAGCCCACTGGGATGGCTTTCCATTGGAAGCAGTTTGCTGGCTAGTGGA
GCACTGCTCGCTACAGGAATGCTATGGCCCGCCTTGTGCCTGCTGGCCAT
CTTATCGCTGGACCTCTTTGTGGTGGTCCGGGAGAACAACCTGCGGCGCA
CAGAGATCTTCCGGAAGGCACGACACGCGATTTCGGAAATTAAACTAGCG
GAACAGCACTTCAGTGACGATTGGCAGCAATCCAACTATCCGCACCTAAG
TAATCCCATGTCGCCCTGCGTTTCCCTGCAGTGGACCTACCGAGATGGAA
AAATTGTCAACTTGCCGTGGGCTTTGTTGGTGCGCGGGGATTACATCGTT
CTACGGCCGGGACACATTTCACCCGGGACCTTGTCACGAACTGGAGACAA
ATAAATTTTTTGCTGCTAACGAAATATATGGAGCTGCTCCTCACGGAGAT
CCTCCAGTGAACCCTGTGGCACGACCTCCGCTGCCCAATCTCGTTTGTTG
TTTGAAAAGCACACCTTACCTGATAACCTTACTGTTTGCCTCAAAACTCT
CTTGAAGCGACCGCCGACCATCTACAATCAGCAGCGCTATCTGCTGGTCA
CAAGTATATACAGCAGTGGGGCTTCTTTATGCCCTAGTTATCACGCTCAT
CT
FMO12306.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:08:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| l(2)k05819-RD | 5201 | CG3054-RD | 143..989 | 8..852 | 4050 | 98.9 | Plus |
| l(2)k05819-RC | 4819 | CG3054-RC | 143..989 | 8..852 | 4050 | 98.9 | Plus |
| l(2)k05819-RA | 4864 | CG3054-RA | 143..989 | 8..852 | 4050 | 98.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:08:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 4394543..4395178 | 158..793 | 2965 | 98.4 | Plus |
| 2L | 23513712 | 2L | 4394338..4394489 | 8..159 | 760 | 100 | Plus |
| 2L | 23513712 | 2L | 4395244..4395296 | 801..852 | 200 | 96.2 | Plus |
Blast to na_te.dros performed on 2014-11-28 18:08:32 has no hits.
FMO12306.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-10-09 09:33:18 Download gff for
FMO12306.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(2)k05819-RA | 135..987 | 1..852 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:45:29 Download gff for
FMO12306.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(2)k05819-RC | 137..989 | 1..852 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:51:17 Download gff for
FMO12306.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(2)k05819-RA | 137..989 | 1..852 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:51:17 Download gff for
FMO12306.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 4394332..4394489 | 1..159 | 97 | -> | Plus |
| 2L | 4394545..4395178 | 160..793 | 99 | -> | Plus |
| 2L | 4395236..4395296 | 794..852 | 95 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:45:29 Download gff for
FMO12306.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 4394332..4394489 | 1..159 | 97 | -> | Plus |
| arm_2L | 4394545..4395178 | 160..793 | 99 | -> | Plus |
| arm_2L | 4395236..4395296 | 794..852 | 95 | | Plus |
