FMO12307.5prime Sequence
654 bp (337 high quality bases) assembled on 2012-10-09
> FMO12307.5prime
AGTCGACATGCTGCCATCCACGGGTCTCTTTAAGGGCTTCTTGTGCCCTT
ACTTTGACGGCCAGGATGCGGCGTCCTGCAAGCGCCCCTTTTGCCACTTT
AAGCATGCTCGCAAAGACGAATTGGAGGCCGCTCCACCTGCAGAACCTTC
CCCCGTGCCCAAGTACAAGCCGGCACCCAAGTTGCTCTCCCTTCCACTGC
CCCAGATCACGCTATGTGCGCCCCGGAAGAAGTCCAATCTGGAGTACCAC
CCGGAGAAGCCGGCTCTTTGACGCATCGCCCGGCTAAGAAAGAAGCAGGA
GGCGTCCGGGGGACAGTGCTCCCCAATATGTGCCCGGGCCAGCCATCTGT
TACAAAATGGCGAAAATATGACGATTGGCAGGGCGGTACTCGAAAAGGAA
TTTGTTGACCAGATGCAGGTGGAGATTGAGGAGCAGTTCCAGAATAACCG
ACGAAAAACAAAAAATAAATACGGGTACTTGAAAACGAGGAGGACCAGGA
AAATACCCACTGACGGATGGCTAGGGATACCCCAAAAGGATCGAAAGCCC
AGCAAGGGACGGGAAAGGGATTTGAAAAGAAAAAGATCAGAGAGCTGAAA
GGGAAAGATCAAGACAGGGATCGGGACCGGGACCGGGACGGGAAAAAAAC
AAGA
FMO12307.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:08:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12877-RC | 3250 | CG12877-RC | 111..754 | 8..652 | 2480 | 93.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:08:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 27707375..27707906 | 115..648 | 1525 | 91.5 | Plus |
| 3R | 32079331 | 3R | 27707210..27707318 | 8..116 | 545 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 18:08:35 has no hits.
FMO12307.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-10-09 09:33:19 Download gff for
FMO12307.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12877-RC | 101..752 | 1..653 | 93 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:45:32 Download gff for
FMO12307.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12877-RC | 103..754 | 1..653 | 93 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:51:19 Download gff for
FMO12307.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12877-RC | 103..754 | 1..653 | 93 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:51:19 Download gff for
FMO12307.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 27707202..27707318 | 1..116 | 97 | -> | Plus |
| 3R | 27707377..27707911 | 117..653 | 92 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:45:32 Download gff for
FMO12307.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 23532924..23533040 | 1..116 | 97 | -> | Plus |
| arm_3R | 23533099..23533633 | 117..653 | 92 | | Plus |
