FMO12308.5prime Sequence
614 bp (399 high quality bases) assembled on 2012-10-09
> FMO12308.5prime
CGACATGTCCGGGTCGGGTGCGTTTGACGATGAGCCGCCGCCGGAGCCGC
GGGACGGATGGCTACTGGTGCGCATCCATGTGCCGGAGCTGAATGTCTAC
AAGTGTTCGCAGTTCCCATCGGAGCGGCTCGTTTGGGATGTCAAGCAGCA
GGTGCTCGCCTCGCTGCCGAAGGAACTGAAGGAGAGCTTCAACTATGGCC
TGTTTGCTCCACCTGCCAACGGCAAGGCGGGAAAATTTCTGGATGAAGAA
CGCCGCCTGGGCGATTATCCTTTCAACGGACCCGTGGGATATTTGGAGCT
CAAGTACAAAAGGCGTGTGTACAAAATGTTGACCCTGGACGATCGCCAGC
TGAATGCCCTTCACACGCGGGCCAATCTGCGTCGCTTTCTGGAGTGCATC
AATTGTCTGTACATGTGCAGAAGATAGCCAAGATGTGTGCCAAGGGCCCT
GGAATCCCAATTTCCATTGTTCGGAAGCGGAGATACTCCGTTGACAGTGC
CACGGCGCCAGAAGCCCAAACAAACTGCTCATCGCTCTGGTCACGGTGAG
CCTTGTTGGATTACAGGACGAACGGATGGCAGCACAGCTCTGCCACCGGG
CTGTTCGAAACATG
FMO12308.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:08:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Prosap-RE | 7346 | CG30483-RE | 1536..2135 | 4..604 | 2605 | 96.7 | Plus |
| Prosap-RD | 8827 | CG30483-RD | 1536..2135 | 4..604 | 2605 | 96.7 | Plus |
| Prosap-RC | 7541 | CG30483-RC | 1536..2135 | 4..604 | 2605 | 96.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:08:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 14069975..14070281 | 604..297 | 905 | 92.7 | Minus |
| 2R | 25286936 | 2R | 14091992..14092161 | 173..4 | 820 | 98.8 | Minus |
| 2R | 25286936 | 2R | 14070352..14070479 | 298..171 | 640 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 18:08:38 has no hits.
FMO12308.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-10-09 09:33:20 Download gff for
FMO12308.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Prosap-RB | 1529..2139 | 1..614 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:45:34 Download gff for
FMO12308.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Prosap-RC | 1533..2143 | 1..614 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:51:21 Download gff for
FMO12308.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Prosap-RC | 1533..2143 | 1..614 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:51:21 Download gff for
FMO12308.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 14069967..14070279 | 299..614 | 93 | <- | Minus |
| 2R | 14070352..14070477 | 173..298 | 100 | <- | Minus |
| 2R | 14091993..14092164 | 1..172 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:45:34 Download gff for
FMO12308.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 9957472..9957784 | 299..614 | 93 | <- | Minus |
| arm_2R | 9957857..9957982 | 173..298 | 100 | <- | Minus |
| arm_2R | 9979498..9979669 | 1..172 | 98 | | Minus |
