FMO12309.5prime Sequence
1023 bp (904 high quality bases) assembled on 2012-10-09
> FMO12309.5prime
GTCGACATGCCACCCAAGATGGAGCCGATTAGCGTGCGCACCGCGCGTCT
GAACAACCTGATTCTGGGCAAAGGAGCTGGCGTCTGTGCGAAGCCCGCTG
GAAGCGCCTCCGGATCAGGTATTCCCGCCTCCACCAGGAGAAGCATTGTA
CCCGTGAGCACCACTAGCGCCGCCGTGGCCGAGGCCATCTGCCGCGAGGG
ACTCCTGGACGCCTTCTGTCTGCTGTACAACGAGTGCGACAAGGATACGC
TGAAGAAGCGCGATCGCAACATCGCCGAGTTTGTCAACAAATTTCGTCCC
ATCATAGAGGAGACCCGCAAACTCAGGGTCAACGCAGATGACTTCCTCAT
CAAGACGCTTATTGGCCAAGGATACTTTGGCAACGTTCACCTGGTGGTGG
AGCGGCAAACCAACGACATATACGCCATGAAGAAGATCAAAAAGTCGGTG
GTGACGACGTCACAAGTCAAGGAGGAGCGCGATATCATGTCCATTCGCAA
CTCTGAATGGCTAATCAATCTGCAGTATGCCTTTCAGGATAACGACAATC
TGTACCTGGTCATGGAGTACATGCCCGGCGGAGACCTTCTCAGCTTGATG
TCACGCCACGGCCCTTTCGATGAGGACTTGGCTCGTTTCTATCTGGCCGA
GCTCACAGTGCCCCTGCACACATTGCACGAGATGGGCTATGTGCATCGGG
ATATAAAGCCTGAAAATATACTGATTGATCGTTTTGGCCATATTAAACTG
GCTGATTTCGGTAATGCCGCTGCCTTGATCGCGATGGCCATGTGCTGAGT
TTGTCGCGGTGGGAACACCGGGATTACATAGCTCAGAGCTGCTGCAAACA
TATCCACCTACAGCTGTCAAGTCGATGCACGATGTCAGCTGCGATATTGT
CATGGCCATATAGAAATGAGTATATGCGAGACACCTTTCACGAGACATGT
CCCGAACTACTCAAGATCCTCCATGCGAGGAAAGTCCCTAGAGCTCACAG
CTTTCGCGACTTGAGGTCTGTAC
FMO12309.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:08:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
sti-RA | 6072 | CG10522-RA | 148..1087 | 6..933 | 4320 | 98.2 | Plus |
sti-RB | 6084 | CG10522-RB | 148..1032 | 6..885 | 4240 | 99.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:08:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 12514382..12514668 | 292..6 | 1435 | 100 | Minus |
3L | 28110227 | 3L | 12513472..12513826 | 885..536 | 1415 | 97.8 | Minus |
3L | 28110227 | 3L | 12513880..12514125 | 538..293 | 1230 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 18:08:41 has no hits.
FMO12309.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-10-09 09:33:21 Download gff for
FMO12309.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sti-RA | 116..1076 | 1..944 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:45:36 Download gff for
FMO12309.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sti-RA | 142..1102 | 1..944 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:51:22 Download gff for
FMO12309.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sti-RA | 142..1102 | 1..944 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:51:22 Download gff for
FMO12309.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 12513474..12513824 | 538..883 | 97 | <- | Minus |
3L | 12513881..12514125 | 293..537 | 100 | <- | Minus |
3L | 12514382..12514674 | 1..292 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:45:36 Download gff for
FMO12309.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 12506574..12506924 | 538..883 | 97 | <- | Minus |
arm_3L | 12506981..12507225 | 293..537 | 100 | <- | Minus |
arm_3L | 12507482..12507774 | 1..292 | 99 | | Minus |