Clone FMO12309 Report

Search the DGRC for FMO12309

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:123
Well:9
Vector:pMK33-CFH-BD
Associated Gene/Transcriptsti-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO12309.5prime Sequence

1023 bp (904 high quality bases) assembled on 2012-10-09

> FMO12309.5prime
GTCGACATGCCACCCAAGATGGAGCCGATTAGCGTGCGCACCGCGCGTCT
GAACAACCTGATTCTGGGCAAAGGAGCTGGCGTCTGTGCGAAGCCCGCTG
GAAGCGCCTCCGGATCAGGTATTCCCGCCTCCACCAGGAGAAGCATTGTA
CCCGTGAGCACCACTAGCGCCGCCGTGGCCGAGGCCATCTGCCGCGAGGG
ACTCCTGGACGCCTTCTGTCTGCTGTACAACGAGTGCGACAAGGATACGC
TGAAGAAGCGCGATCGCAACATCGCCGAGTTTGTCAACAAATTTCGTCCC
ATCATAGAGGAGACCCGCAAACTCAGGGTCAACGCAGATGACTTCCTCAT
CAAGACGCTTATTGGCCAAGGATACTTTGGCAACGTTCACCTGGTGGTGG
AGCGGCAAACCAACGACATATACGCCATGAAGAAGATCAAAAAGTCGGTG
GTGACGACGTCACAAGTCAAGGAGGAGCGCGATATCATGTCCATTCGCAA
CTCTGAATGGCTAATCAATCTGCAGTATGCCTTTCAGGATAACGACAATC
TGTACCTGGTCATGGAGTACATGCCCGGCGGAGACCTTCTCAGCTTGATG
TCACGCCACGGCCCTTTCGATGAGGACTTGGCTCGTTTCTATCTGGCCGA
GCTCACAGTGCCCCTGCACACATTGCACGAGATGGGCTATGTGCATCGGG
ATATAAAGCCTGAAAATATACTGATTGATCGTTTTGGCCATATTAAACTG
GCTGATTTCGGTAATGCCGCTGCCTTGATCGCGATGGCCATGTGCTGAGT
TTGTCGCGGTGGGAACACCGGGATTACATAGCTCAGAGCTGCTGCAAACA
TATCCACCTACAGCTGTCAAGTCGATGCACGATGTCAGCTGCGATATTGT
CATGGCCATATAGAAATGAGTATATGCGAGACACCTTTCACGAGACATGT
CCCGAACTACTCAAGATCCTCCATGCGAGGAAAGTCCCTAGAGCTCACAG
CTTTCGCGACTTGAGGTCTGTAC

FMO12309.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:08:42
Subject Length Description Subject Range Query Range Score Percent Strand
sti-RA 6072 CG10522-RA 148..1087 6..933 4320 98.2 Plus
sti-RB 6084 CG10522-RB 148..1032 6..885 4240 99.1 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:08:41
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 12514382..12514668 292..6 1435 100 Minus
3L 28110227 3L 12513472..12513826 885..536 1415 97.8 Minus
3L 28110227 3L 12513880..12514125 538..293 1230 100 Minus
Blast to na_te.dros performed on 2014-11-28 18:08:41 has no hits.

FMO12309.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-10-09 09:33:21 Download gff for FMO12309.5prime
Subject Subject Range Query Range Percent Splice Strand
sti-RA 116..1076 1..944 97   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:45:36 Download gff for FMO12309.5prime
Subject Subject Range Query Range Percent Splice Strand
sti-RA 142..1102 1..944 97   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:51:22 Download gff for FMO12309.5prime
Subject Subject Range Query Range Percent Splice Strand
sti-RA 142..1102 1..944 97   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:51:22 Download gff for FMO12309.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 12513474..12513824 538..883 97 <- Minus
3L 12513881..12514125 293..537 100 <- Minus
3L 12514382..12514674 1..292 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:45:36 Download gff for FMO12309.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 12506574..12506924 538..883 97 <- Minus
arm_3L 12506981..12507225 293..537 100 <- Minus
arm_3L 12507482..12507774 1..292 99   Minus