Clone FMO12310 Report

Search the DGRC for FMO12310

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:123
Well:10
Vector:pMK33-CFH-BD
Associated Gene/TranscriptCG13917-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO12310.5prime Sequence

750 bp (590 high quality bases) assembled on 2012-10-09

> FMO12310.5prime
GTCGACATGGATGCGTCTCCCCTGTCGCCGGAACAGGCTCCCATCTTGGT
CACGGGGAGGTCATTGGACCAGCAGGTGGACGCCAGTTCGCCCAACCACT
CGAACTACTCGAATCTCACGAACAGCAGCAGCAGCGGCAGCAGTGCCAGC
AGTCCTTCGGCCTGCTCGTCCTCGTCTTCCTCTTCGTCGGCTCCCCAATA
CAGTGCGGATATCCGGGCGGCTGCACTGCATCCGCAGCAGCCACAACAGC
AGCAGAGAGGATCTGCCTCCGGATCGCGATCGAGATCAGGATCGACGAAA
ACTTGTGAGCTGGACGTGGGCGAGGAGCGTGATACCTTCTCGCCGGTCTC
CAGTCCGGATTGCAACGGAGCCGCTGCCGTGAATGTTCTGCCCTCTTCGA
GTGGCTCTGTGGACAACTAGATCTACGAGGGAGGCAGCAAGGGAAAGCCA
CCCTCCAAGGAAGAGAAGCAGCGCCAGAACGAGGAGATCGTGTGCATGGA
GACCTCGACGGTGTCCACCGAAACTGGTTCCTGGGAGTCCATGTACCCTG
CTGCGAGCGTTGCTCCGATGCTTGAACCCGAGGAAATGGAAGCCACTACG
GTATTCAAAGGCATCAGTGCCATCACTTTGCTGCGCGACCTATGAAGCGG
TATCAGCCGTTGTCCACCTCAGGAACTAGCGCCTGCTCATAGACGCTTCA
TCGCTGAGGACTATGATGAGTGTTGTCTTCCCCAGCCTAATGGCCCGGCA

FMO12310.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:08:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG13917-RD 8335 CG13917-RD 1356..2100 7..745 3365 97.5 Plus
CG13917-RC 8539 CG13917-RC 1560..2304 7..745 3365 97.5 Plus
CG13917-RB 8076 CG13917-RB 1558..2302 7..745 3365 97.5 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:08:12
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 1593670..1594374 7..709 3230 97.9 Plus
Blast to na_te.dros performed 2014-11-28 18:08:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6716..6763 209..255 120 75 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2324..2400 225..302 117 62.8 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2285..2332 210..254 116 75 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6775..6848 225..302 111 62.8 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6754..6784 225..255 110 83.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6778..6817 217..255 107 77.5 Plus

FMO12310.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-10-09 09:33:11 Download gff for FMO12310.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13917-RB 1555..2307 1..749 96   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:45:16 Download gff for FMO12310.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13917-RA 1357..2109 1..749 96   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:51:07 Download gff for FMO12310.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13917-RB 1555..2307 1..749 96   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:51:07 Download gff for FMO12310.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 1593667..1594419 1..749 96   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:45:16 Download gff for FMO12310.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 1593667..1594419 1..749 96   Plus