FMO12310.5prime Sequence
750 bp (590 high quality bases) assembled on 2012-10-09
> FMO12310.5prime
GTCGACATGGATGCGTCTCCCCTGTCGCCGGAACAGGCTCCCATCTTGGT
CACGGGGAGGTCATTGGACCAGCAGGTGGACGCCAGTTCGCCCAACCACT
CGAACTACTCGAATCTCACGAACAGCAGCAGCAGCGGCAGCAGTGCCAGC
AGTCCTTCGGCCTGCTCGTCCTCGTCTTCCTCTTCGTCGGCTCCCCAATA
CAGTGCGGATATCCGGGCGGCTGCACTGCATCCGCAGCAGCCACAACAGC
AGCAGAGAGGATCTGCCTCCGGATCGCGATCGAGATCAGGATCGACGAAA
ACTTGTGAGCTGGACGTGGGCGAGGAGCGTGATACCTTCTCGCCGGTCTC
CAGTCCGGATTGCAACGGAGCCGCTGCCGTGAATGTTCTGCCCTCTTCGA
GTGGCTCTGTGGACAACTAGATCTACGAGGGAGGCAGCAAGGGAAAGCCA
CCCTCCAAGGAAGAGAAGCAGCGCCAGAACGAGGAGATCGTGTGCATGGA
GACCTCGACGGTGTCCACCGAAACTGGTTCCTGGGAGTCCATGTACCCTG
CTGCGAGCGTTGCTCCGATGCTTGAACCCGAGGAAATGGAAGCCACTACG
GTATTCAAAGGCATCAGTGCCATCACTTTGCTGCGCGACCTATGAAGCGG
TATCAGCCGTTGTCCACCTCAGGAACTAGCGCCTGCTCATAGACGCTTCA
TCGCTGAGGACTATGATGAGTGTTGTCTTCCCCAGCCTAATGGCCCGGCA
FMO12310.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:08:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13917-RD | 8335 | CG13917-RD | 1356..2100 | 7..745 | 3365 | 97.5 | Plus |
CG13917-RC | 8539 | CG13917-RC | 1560..2304 | 7..745 | 3365 | 97.5 | Plus |
CG13917-RB | 8076 | CG13917-RB | 1558..2302 | 7..745 | 3365 | 97.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:08:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 1593670..1594374 | 7..709 | 3230 | 97.9 | Plus |
Blast to na_te.dros performed 2014-11-28 18:08:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6716..6763 | 209..255 | 120 | 75 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2324..2400 | 225..302 | 117 | 62.8 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2285..2332 | 210..254 | 116 | 75 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6775..6848 | 225..302 | 111 | 62.8 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6754..6784 | 225..255 | 110 | 83.9 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6778..6817 | 217..255 | 107 | 77.5 | Plus |
FMO12310.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-10-09 09:33:11 Download gff for
FMO12310.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13917-RB | 1555..2307 | 1..749 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:45:16 Download gff for
FMO12310.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13917-RA | 1357..2109 | 1..749 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:51:07 Download gff for
FMO12310.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13917-RB | 1555..2307 | 1..749 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:51:07 Download gff for
FMO12310.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 1593667..1594419 | 1..749 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:45:16 Download gff for
FMO12310.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 1593667..1594419 | 1..749 | 96 | | Plus |