FMO12313.5prime Sequence
945 bp (928 high quality bases) assembled on 2012-10-09
> FMO12313.5prime
GTCGACATGGCCTCTACGGACTGTTACCTCGCACTGGAGGATGGCACAGT
GTTGCCCGGGTACTCCTTTGGCTACGTTCCCTCGGAGAATGAATCCAAAG
TGGGTTTTGGTGGCGAGGTGGTCTTCCAAACGGGCATGGTTGGCTACACG
GAGGCGCTCACGGATCGATCGTACAGTGGTCAGATCCTGGTGCTTACCTA
TCCACTGATCGGTAACTATGGGGTACCAGCGCCGGATGAGGACGAGCACG
GACTGCCGCTGCACTTCGAGTGGATGAAAGGCGTCGTCCAGGCCACCGCC
TTGGTGGTGGGCGAGGTGGCTGAAGAGGCATTTCACTGGCGCAAATGGAA
GACGCTGCCCGATTGGCTGAAGCAGCACAAGGTGCCCGGAATTCAAGACA
TTGATACTCGAGCCCTGACCAAAAAACTGAGGGAGCAGGGAAGCATGCTA
GTTTTTTTTTGTCTACGAGAAACCGCCGGTCGAAGGGCTGCCCAAGTCCA
GTTTCGTAGATCCGAACGTCAGGAATTTGGCCAAGGAGTGCAGCGTTAAG
GAGCGACAAGTGTACGGTAATCCCAATGGCAAGGGACCACGGATCGCCAT
TCTGGACTGTGGACTGAAGCTCAACCAGTTGCGCTGCCTGCTGCAACGTG
GCGCCTCGGTGACCTTGCTCCCCTGGAGCGCTCGTCTCGAGGATGAGCAG
TTCGACGCCCTCTTTCTGTCTAACGGACCTGGTAATCCGGAGAGCTGCGA
CCAGATCGTCCCACAGGTGAGAAAAGTGATTGAGGAGGGTCAAAAGCCCG
TCTTTGAATATGTCTGGGTCACCAGCTGTTATCGAAAGCAATCGGCTGCT
CTACTTACAAAATGAAGTACGGCAATCGAGGACACAATCTGCCCTGCCTG
CCACGAGCAACTGGAACGTTGCCTGATGAACGTCGCAAATCACGG
FMO12313.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:08:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| r-RE | 6946 | CG18572-RE | 154..1091 | 7..945 | 4415 | 98.3 | Plus |
| r-RD | 6875 | CG18572-RD | 83..1020 | 7..945 | 4415 | 98.3 | Plus |
| r-RA | 7057 | CG18572-RA | 265..1202 | 7..945 | 4415 | 98.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:08:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 16656398..16657159 | 7..769 | 3660 | 99 | Plus |
| X | 23542271 | X | 16657219..16657383 | 765..929 | 670 | 96.4 | Plus |
Blast to na_te.dros performed on 2014-11-28 18:08:50 has no hits.
FMO12313.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-10-09 09:33:23 Download gff for
FMO12313.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| r-RB | 238..1182 | 1..945 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:45:41 Download gff for
FMO12313.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| r-RC | 258..1202 | 1..945 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:51:27 Download gff for
FMO12313.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| r-RA | 258..1202 | 1..945 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:51:27 Download gff for
FMO12313.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 16656391..16657156 | 1..766 | 98 | -> | Plus |
| X | 16657221..16657399 | 767..945 | 95 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:45:41 Download gff for
FMO12313.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 16550424..16551189 | 1..766 | 98 | -> | Plus |
| arm_X | 16551254..16551432 | 767..945 | 95 | | Plus |
