FMO12314.5prime Sequence
718 bp (639 high quality bases) assembled on 2012-10-09
> FMO12314.5prime
AGTCGACATGTCGGACAAGGTGAGCACATCCTTGGCAGCCCAGCTGCATT
CCCATGCCCTGGCGTCGGCGGAAGCAGGTGGTATTGGTGGAGTGAACGGT
GGCCCAATTGCCTGCCATGCCAGCACGGATAAGGATGCCCAGGCTCCACC
GCTCCAGTTTGAAATGGATGCTCCGGCGGCCGCCATCAGTGCCCAGCTAA
ACTTCAAAATCGTGCCCGCTGACAGTTTGCCAGGCCTGAGTTATCAGGAC
ATGTTCGCCTCCATGAATACATCACAAATCTCCAATGCCTCCACGGAGTC
CAGCTGCAGTCCGCCCATCCAGGGCGCTGTACCGCCTCCAAAGCCCAGTC
GTCACATGGCCGTACAGCCGCTGAATAGCAAATCTTGCCGATTTCCCAAG
CTAGAGGAGTGCGCCCACTTCCACTACGAAAGGGTCCAGCTGGGTCCGTT
TTTTCGTGCAGCTGTTAGATGACAAGTCGGAGCACATGGGCAGCAGTATT
GCTTCCCCAATCTCTTGGCGGTGATTTACCACACAGTTTCGCTGCGCAGC
TTTTTCTCCGGAGAGCTGTTGGTTTATCATCCGCGTGTGCCCACAGCGCT
GCGAACCGTTTCTTGATCAAGCGGAGCTTCGAGAACATGCAACTGCTGGA
CGAGATGCTCCACCGGTGCGTATCCACCGGAAAATTGTGGACTGCGCAAC
ATGGAGGAACTGGCGTGC
FMO12314.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:08:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CdGAPr-RD | 7824 | CG10538-RD | 224..929 | 7..715 | 3305 | 98.3 | Plus |
| CdGAPr-RC | 6360 | CG10538-RC | 152..857 | 7..715 | 3305 | 98.3 | Plus |
| CdGAPr-RB | 6366 | CG10538-RB | 152..857 | 7..715 | 3305 | 98.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:08:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 19782421..19782793 | 379..7 | 1865 | 100 | Minus |
| 2L | 23513712 | 2L | 19782033..19782365 | 715..380 | 1265 | 96.4 | Minus |
Blast to na_te.dros performed 2014-11-28 18:08:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| gypsy12 | 10218 | gypsy12 GYPSY12 10218bp | 3570..3620 | 284..335 | 113 | 71.2 | Plus |
FMO12314.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-10-09 09:33:24 Download gff for
FMO12314.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CdGAPr-RC | 164..877 | 1..718 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:45:42 Download gff for
FMO12314.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CdGAPr-RB | 146..859 | 1..718 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:51:28 Download gff for
FMO12314.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CdGAPr-RB | 146..859 | 1..718 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:51:28 Download gff for
FMO12314.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 19782031..19782365 | 380..718 | 96 | <- | Minus |
| 2L | 19782421..19782799 | 1..379 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:45:42 Download gff for
FMO12314.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 19782031..19782365 | 380..718 | 96 | <- | Minus |
| arm_2L | 19782421..19782799 | 1..379 | 99 | | Minus |
