FMO12318.5prime Sequence
993 bp (955 high quality bases) assembled on 2012-10-09
> FMO12318.5prime
GTCGACATGGAAAAGCGGCTTAGCGACAGTCCCGGAGATTGTCGCGTAAC
GAGATCCACCATGACGCCCACTCTGCGCCTGGATCAGACTTCCAGGCAAG
AGCCTCTGCCCCAGCAGCCGGATAATGGCCCAGCTGCAGCGCCTGGAAAG
TCTAAGTCCCCCACTCCGTTGCCCGGAAAATCACAGGCCGCCCAGCATCA
CCAGTTCCGCGCTCCGCAGCAGCAGCAGGGCCCGAAAAACCGGAACAAGG
CCTGGAGTAAGAGGCAACACAAGGCCGGCGGGAAGCACAACCCCAGTGCC
TGTGTCGGCGCAAGCAGTGGCCAGGCCCAGTCTACGGGCTCCTCTGTCAT
AGCCGCGACTCTCCTTCCCACTGCGGCGTCGGCTCACAAGGCGGATCTCG
AGAACATCCAGAATATCCATAACAAAAATCTGACTGCCGGCGGTGGAGTC
AACCATCATGGGAACGCCGGAACAGCGCATCACGGCGGTGGCGGTGGTGC
CGGCGCCCATCATGCCGCAGCGGGTGGCCACCATCACCATCACAACACGA
GGCTGGCGCAAAACGCTGCCGCTGGTGGAGCCAGCGGAGGAGGAACCATT
CAAATGCATAAGAAAATGTTAAGAGGTCACCATCACCACGTGCTGTGCGC
CGGAAAACAATGCTAACCACACGTGCTGCCTGGTGACGGGATGCAACGGC
AGCTCTATCGGCGGAGTAGCGTGGCAGGAAGCGGAGGAGCTACCGCCTCA
GCGGGGGGCGGCGGAGCGTCGTGCAAGGAAGCGCAGAGCTGCAAGGACAC
CAGCTCGCTGAGCGGCACAGCAGCATTGCGGGCAGCGCTGGAGCGGGCAC
GCAGTCCACTATTGCTGCGGCCGCTCCAAGTTCTTTTGCCGGAAAAGAGG
TTACGCAAGGAGTGATTGTACCGCCCACCAGTTTCTGCTGGGCGTAACTC
TCCGATCCTTCAACCTTATTTCGCTGCAAACGAAAAACCCTCA
FMO12318.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:09:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| bin3-RD | 5616 | CG8276-RD | 673..1658 | 7..983 | 4555 | 98.2 | Plus |
| bin3-RA | 5606 | CG8276-RA | 663..1648 | 7..983 | 4555 | 98.2 | Plus |
| bin3-RB | 4760 | CG8276-RB | 610..1595 | 7..983 | 4555 | 98.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:09:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 6233691..6234304 | 7..620 | 3040 | 99.7 | Plus |
| 2R | 25286936 | 2R | 6234767..6235094 | 622..944 | 1280 | 97.6 | Plus |
Blast to na_te.dros performed on 2014-11-28 18:09:04 has no hits.
FMO12318.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-10-09 09:33:28 Download gff for
FMO12318.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| bin3-RA | 659..1633 | 1..968 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:45:49 Download gff for
FMO12318.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| bin3-RC | 563..1537 | 1..968 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:51:35 Download gff for
FMO12318.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| bin3-RB | 605..1579 | 1..968 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:51:35 Download gff for
FMO12318.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 6233686..6234307 | 1..623 | 98 | -> | Plus |
| 2R | 6234769..6235121 | 624..968 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:45:49 Download gff for
FMO12318.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 2121191..2121812 | 1..623 | 98 | -> | Plus |
| arm_2R | 2122274..2122626 | 624..968 | 96 | | Plus |
