FMO12319.5prime Sequence
915 bp (773 high quality bases) assembled on 2012-10-09
> FMO12319.5prime
GTCGACATGGCGCCGCAGCCAGTGGTTACGGGGCTATCTCCGAAGGAGGG
TCCTCCTGGCACCCGCGTTATCATTCGCGGCGAGTTCCTGGGCACCCGAG
TGCAAGATCTAATTGGTCTAAAAATCTGCGGTTCAGATTGTCTGCTGTCG
GCGGAGTGGAAATCACCCAATAAAATCATCGCACGCACTGGTCCGGCGAA
GGGAAAAGGCGATATCATAGTGACCACTTTAAGCGGCGGAGTGGGCACGT
CCACGGTTCAGTTTCGTGCATACCACGAGACCATTGGCCCGCTCAAGGAG
TCCGCCGTGTGGATCGAGGAGTCGCCCTCGCAGAATTTTGCCTGGGGTCG
GCGCACCCTAGCCCAATCCGGACTGACGCAGGAGGATCCACTTGGGCTGT
CCATCGAGGGTAACGAGCAGAAGATCCCCGAGGACCTCCGCGATCTCTTT
CCCTTTTTTCTGCGGGGATCTGTCGCAGGAGCACTTCTCCCCGGCCTGGT
TCCTGCTTGAAAATCACCTGGCCACCTCCTTCGAGGATCTCAAGGCGGGC
CTGTCCTACTTTGAAGCGGAAAGTGGAAAGCCAGAAGGAAGGTCAGTTGT
CCCTTCCTCAAGTCCTATGCAGGCTCGGTGATTGACCAGCTCGATACGCT
GATGAACATCCGAGACTAGCTACAGGAGGATGTCAAGCTACACGGCAATG
AGACCCTAAATATCTTGGAAACTTCCATAGAGAACTCCATTAGCGATCGC
AAAAGATATTCACGGATGTGCTGTTGCGCAAAGAGAAAGTGGGATTCACG
CCGGTCCGTTCTGTTCGCCCTGTCACGGCCCAAGTTCCTCTTCTGTCTGC
CCAATTCGGTGACAGACGTGCAAGGCGGTTGAATATGACATTGTGTTAAG
ACCTCTTCGGCGCCA
FMO12319.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:09:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Sec5-RA | 2885 | CG8843-RA | 105..992 | 7..895 | 4000 | 97.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:09:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 3457584..3458199 | 115..733 | 2795 | 97.9 | Plus |
| 2L | 23513712 | 2L | 3457406..3457516 | 7..117 | 555 | 100 | Plus |
| 2L | 23513712 | 2L | 3458254..3458417 | 734..895 | 490 | 92.1 | Plus |
Blast to na_te.dros performed on 2014-11-28 18:09:08 has no hits.
FMO12319.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-10-09 09:33:28 Download gff for
FMO12319.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sec5-RA | 71..980 | 1..909 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:45:50 Download gff for
FMO12319.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sec5-RA | 98..1007 | 1..909 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:51:37 Download gff for
FMO12319.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sec5-RA | 98..1007 | 1..909 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:51:37 Download gff for
FMO12319.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 3457399..3457514 | 1..115 | 96 | -> | Plus |
| 2L | 3457585..3458199 | 116..733 | 97 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:45:50 Download gff for
FMO12319.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 3457399..3457514 | 1..115 | 96 | -> | Plus |
| arm_2L | 3457585..3458199 | 116..733 | 97 | -> | Plus |
