FMO12320.5prime Sequence
803 bp (795 high quality bases) assembled on 2012-10-09
> FMO12320.5prime
AGTCGACATGGATCGCAAGGCTGAGCTGGAACGCAAGAAGGCCAAGTTGG
CCGCCCTGCGCGAGGAGAAGGATCGCCGGCGTCGCGAGAAGGAGATCAAG
GACATGGAGGAGGCGGCCGGTCGCATTGGCGGCGGAGCAGGCATCGACAA
GGATCAGCGCAAGGATCTCGACGAAATGCTGTCATCGCTGGGCGTGGCCC
CCGTCTCCGAGGTCCTTTCCTCACTCTCCTCCGTCAACTCGATGACTTCG
GACAACTCGAACACACAGACCCCCGACGCCAGCCTCCAAGCCACTGTCAA
TGGCCAGAGCGGCGGAAAGAAACAGCCCCTCAACCTAAGCGTCTACAATG
TGCAGGCTACGAACATTCCACCAAAAGAGACACTGGTCTACACAAAGCAG
ACCCAGACGACCAGTACCGGAGGCGGAAACGGCGATGCTCATGCTACGGA
TTATTATGGAGACGACGAAGAGAGCTCACTGCAGAACCTGGGCAACGGAT
TCACCTCCAAGCTGCCACCGGGCTATCTCACCCACGGCCTGCCCACCGTT
AAGGACGTCGCCCCGGCCATCACACCACTCGAGATCAAGAAGGAGACTGA
AGTGAAGAAGGAGGTCAACGAGCTGTCCGAGGAGCAGAAGCAGATGATCA
TACTGTCGGAGAACTTCCAGCGGTTCGTGGTGCGTGCCGGCCGCGTCATC
GAACGGGCCCCTCTCGGAGAATGTGGACATATACACGGACTACATCAGCG
GCGGCGACAGCGAGGAGGCTAACGACGAGCGATCGCATGCGCGGCTACTT
CGC
FMO12320.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:09:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| sw-RB | 2841 | CG18000-RB | 200..987 | 8..796 | 3890 | 99.6 | Plus |
| sw-RC | 2838 | CG18000-RC | 200..984 | 8..796 | 3835 | 99.2 | Plus |
| sw-RN | 2862 | CG18000-RN | 200..1008 | 8..796 | 3670 | 97 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:09:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 20175674..20175855 | 796..614 | 835 | 98.4 | Minus |
| X | 23542271 | X | 20183501..20183682 | 796..614 | 835 | 98.4 | Minus |
| X | 23542271 | X | 20191225..20191406 | 796..614 | 835 | 98.4 | Minus |
| X | 23542271 | X | 20198941..20199122 | 796..614 | 835 | 98.4 | Minus |
| X | 23542271 | X | 20206665..20206846 | 796..614 | 835 | 98.4 | Minus |
| X | 23542271 | X | 20214326..20214507 | 796..614 | 835 | 98.4 | Minus |
| X | 23542271 | X | 20222008..20222189 | 796..614 | 835 | 98.4 | Minus |
| X | 23542271 | X | 20229882..20230063 | 796..614 | 835 | 98.4 | Minus |
| X | 23542271 | X | 20176238..20176394 | 614..458 | 785 | 100 | Minus |
| X | 23542271 | X | 20184060..20184216 | 614..458 | 785 | 100 | Minus |
| X | 23542271 | X | 20191789..20191945 | 614..458 | 785 | 100 | Minus |
| X | 23542271 | X | 20199505..20199661 | 614..458 | 785 | 100 | Minus |
| X | 23542271 | X | 20207229..20207385 | 614..458 | 785 | 100 | Minus |
| X | 23542271 | X | 20214885..20215041 | 614..458 | 785 | 100 | Minus |
| X | 23542271 | X | 20222567..20222723 | 614..458 | 785 | 100 | Minus |
| X | 23542271 | X | 20230441..20230597 | 614..458 | 785 | 100 | Minus |
| X | 23542271 | X | 20235508..20235663 | 163..8 | 780 | 100 | Minus |
| X | 23542271 | X | 20235288..20235434 | 309..163 | 735 | 100 | Minus |
| X | 23542271 | X | 20234775..20234904 | 437..308 | 650 | 100 | Minus |
| X | 23542271 | X | 20178270..20178399 | 437..308 | 635 | 99.2 | Minus |
| X | 23542271 | X | 20186145..20186274 | 437..308 | 635 | 99.2 | Minus |
| X | 23542271 | X | 20193875..20194004 | 437..308 | 635 | 99.2 | Minus |
| X | 23542271 | X | 20201591..20201720 | 437..308 | 635 | 99.2 | Minus |
| X | 23542271 | X | 20209261..20209390 | 437..308 | 635 | 99.2 | Minus |
| X | 23542271 | X | 20216917..20217046 | 437..308 | 635 | 99.2 | Minus |
| X | 23542271 | X | 20224652..20224781 | 437..308 | 635 | 99.2 | Minus |
Blast to na_te.dros performed on 2014-11-28 18:09:11 has no hits.
FMO12320.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-10-09 09:33:29 Download gff for
FMO12320.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sw-RL | 521..977 | 1..458 | 99 | -> | Plus |
| sw-RL | 1026..1367 | 459..803 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:45:51 Download gff for
FMO12320.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sw-RB | 194..992 | 1..803 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:51:39 Download gff for
FMO12320.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sw-RB | 194..992 | 1..803 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:51:39 Download gff for
FMO12320.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 20233423..20233443 | 438..458 | 100 | <- | Minus |
| X | 20234775..20234902 | 310..437 | 100 | <- | Minus |
| X | 20235288..20235434 | 163..309 | 100 | <- | Minus |
| X | 20235509..20235667 | 1..162 | 97 | | Minus |
| X | 20229877..20230062 | 615..803 | 97 | <- | Minus |
| X | 20230441..20230596 | 459..614 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:45:51 Download gff for
FMO12320.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 20100951..20101136 | 615..803 | 97 | <- | Minus |
| arm_X | 20101515..20101670 | 459..614 | 100 | <- | Minus |
| arm_X | 20104497..20104517 | 438..458 | 100 | <- | Minus |
| arm_X | 20105849..20105976 | 310..437 | 100 | <- | Minus |
| arm_X | 20106362..20106508 | 163..309 | 100 | <- | Minus |
| arm_X | 20106583..20106741 | 1..162 | 97 | | Minus |
