Clone FMO12322 Report

Search the DGRC for FMO12322

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:123
Well:22
Vector:pMK33-CFH-BD
Associated Gene/Transcriptpst-RF
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO12322.5prime Sequence

293 bp (210 high quality bases) assembled on 2012-10-09

> FMO12322.5prime
ACCCGCACCGCACGTGAAGTGCAGCAAAACTTTGCCGAGTCGCTCGGCTA
CGCGGAAGAGATAATCTGGGATCTGTTGTCCCATGAACAACATGACGTGC
TAAGGGGCAAACTCTGTCAATTGATTCGTGATTCTCCGGAACCGAAAACT
GCAACGGAAACTGAAAAAGACAGAAAAATCCGGCTGAAGGTCAACGCAGA
TAATGAGCGCGCCCGTCAGATCATTTTCGATTCCGTTTGGCAGCAACGTG
AGTTGGACTTACAGATTGTATATAGTATTATACATTTTTTCGC

FMO12322.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:08:45
Subject Length Description Subject Range Query Range Score Percent Strand
pst-RF 2479 CG8588-RF 123..415 1..293 1435 99.3 Plus
pst-RG 2404 CG8588-RG 123..370 1..248 1240 100 Plus
pst-RE 2551 CG8588-RE 270..517 1..248 1240 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:08:43
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 7359632..7359850 293..75 1065 99.1 Minus
3L 28110227 3L 7359919..7359994 76..1 380 100 Minus
Blast to na_te.dros performed on 2014-11-28 18:08:44 has no hits.

FMO12322.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-10-09 09:33:22 Download gff for FMO12322.5prime
Subject Subject Range Query Range Percent Splice Strand
pst-RF 270..562 1..293 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:45:38 Download gff for FMO12322.5prime
Subject Subject Range Query Range Percent Splice Strand
pst-RF 123..415 1..293 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:51:23 Download gff for FMO12322.5prime
Subject Subject Range Query Range Percent Splice Strand
pst-RF 123..415 1..293 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:51:23 Download gff for FMO12322.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 7359632..7359850 75..293 99 <- Minus
3L 7359921..7359994 1..74 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:45:38 Download gff for FMO12322.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 7352732..7352950 75..293 99 <- Minus
arm_3L 7353021..7353094 1..74 100   Minus