FMO12323.5prime Sequence
877 bp (637 high quality bases) assembled on 2012-10-09
> FMO12323.5prime
AGTCGACATGGACGATCCTCTTAAGCCCAAGCCAGTTCCACTGGCTGCCG
AAACGGTACTGTGGTTCGAGTTCCTGCTCGATCCGCACAAGATTACGCAG
CATCTGCAGCGCCCGCATCCCGAGCCCAACGCCATGGAGCTGATCGTGCA
GTTCATCAGCATGACGCCGAACACGGCGCAGGAGTCAGTGGGGACGCCTG
GCAGTGATTTGCAGAATCTAAACCAGACGCCATCGAATTCGGGACCCATT
CCCGGCGTGGTTGGTGGTGCCCCTGCGCCGACAACGCCCACTGCCTCCGG
CGGAGTGGGCATGCCCCATAGCCCACAAAGGCCCGCGGAGAAGGGCCTGC
AATTGAACCGCAAGCAGTTGGCACTGAAAATCCTCGAGCTGAAGGTAGCC
ACTTGGCTGAAGTGGGATCTGGATGCATTGGAGAAGAACCTGCCTGTGAT
TATGCAGCTGGCCTTGCTGCGCGATCTGTGCACCATAAGCTACGGCTGCT
CCTTAAGTATTCCCCTGCCCAATGATTTTGACACGAGAATTTCCGCTGCT
GGAAACGAAAGAGCAGCAAGATTCGCCTTGACCATATACCACCGCATGCT
GCTGCGAATTGCAACTGATAAAGGAGCAGGCGTTAAAAGCGCCCGTCCTC
AAACACAATGTACCAAACTGTGGACCAGCTCCAGCAGTTTCTGGACACAC
CGACTCAACCATCCATCGAGTATTTGCACAACTCTGCGCCTCGACAAAAC
TTTTCTACTATTTCACTACGACAGCTTTGTTCCGCTGCGATGTGATGATA
TCGGCAATGGGCCAAAACTACAATGGTTATGCATCTATTATCTCCCCAGG
AATTGAAAGCCCAACTGCATACCAAGC
FMO12323.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:08:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| IntS8-RA | 3293 | CG5859-RA | 93..956 | 7..869 | 4025 | 98.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:08:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 16850712..16851132 | 122..542 | 2075 | 99.5 | Plus |
| 2R | 25286936 | 2R | 16851364..16851573 | 660..869 | 755 | 94.8 | Plus |
| 2R | 25286936 | 2R | 16850529..16850644 | 7..122 | 580 | 100 | Plus |
| 2R | 25286936 | 2R | 16851191..16851301 | 543..653 | 460 | 98.2 | Plus |
Blast to na_te.dros performed on 2014-11-28 18:08:47 has no hits.
FMO12323.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-10-09 09:33:23 Download gff for
FMO12323.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5859-RA | 67..943 | 1..877 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:45:39 Download gff for
FMO12323.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| IntS8-RA | 88..964 | 1..877 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:51:25 Download gff for
FMO12323.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| IntS8-RA | 88..964 | 1..877 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:51:25 Download gff for
FMO12323.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 16851364..16851581 | 660..877 | 93 | | Plus |
| 2R | 16850524..16850644 | 1..122 | 97 | -> | Plus |
| 2R | 16850713..16851132 | 123..542 | 99 | -> | Plus |
| 2R | 16851191..16851308 | 543..659 | 97 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:45:39 Download gff for
FMO12323.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 12738029..12738149 | 1..122 | 97 | -> | Plus |
| arm_2R | 12738218..12738637 | 123..542 | 99 | -> | Plus |
| arm_2R | 12738696..12738813 | 543..659 | 97 | -> | Plus |
| arm_2R | 12738869..12739086 | 660..877 | 93 | | Plus |
