FMO12326.5prime Sequence
802 bp (750 high quality bases) assembled on 2012-10-09
> FMO12326.5prime
GTCGACATGAGCGTTTTCGATGACTTCCAGCGTCTGTGGATGCAGCGATT
TCCGCAAAGCTCTCTATCCGATGCATGGGAACAAGATGTTCGGGCTAGTC
TCGAGCGACACAAAGTGCGCATTAATGAGCTAAGCAAGGAGCTTGAGCAG
GAGACGCTCTATGTGGAGTATCTAGAGCGTCTGCTGTCCGACGTGGAACG
GTATCGCGTTTCTGGCGGGGATCCAAAGGCACTCTTTGAGGCTGCTAGCG
GTAGTTGTGCTAGCAGCAATAACAGCAACTGCAGCAGCACCACCAATGGA
GCTACACAAGAAGAAAGCAACACTAATCTGGACAAAGATTTTAAATCTAG
TTTAAATCTGCGCGAGTCTCCTTCTTCCACTGGCGCCAAGGACAAGGATC
GCCTGTCGCTCAACCCAGACAACAAATACACAACACACACAAATGCCGTT
ATATGTGGGATCGGATCGGAAAAGGTGAGCGGTCCACTTCACTCCACTCA
GATCACGGCGGACGGCAAACGAACAGGGGAGCTGTATTTAAAGCGGGAAG
AAGACAAATGCAAGGATAGTAATAGTGAGGACACCGATGGGGCCCTGCAG
CAGTGCATCACGGAATTGGCGGCGTCTTTAAAAAGCCCAGCCGGATAACC
TGGCAGGAGGGCGTCTAGAAAAACGATGTCGATATCGATAAACCGCTGCG
AAGTCGACGTCACAATACGTTATGTCATTCAGGTCAAAGAGGCCAAAGAA
AAGAAAGCGCTGATGGAACAACCTCCTCATCGGGGATCGGTGAAACGCTT
AA
FMO12326.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:09:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RhoGAP1A-RB | 5012 | CG00000-RB | 303..1097 | 5..798 | 3785 | 98.7 | Plus |
| RhoGAP1A-RA | 5082 | CG00000-RA | 303..1097 | 5..798 | 3785 | 98.7 | Plus |
| RhoGAP1A-RE | 5089 | CG40494-RE | 307..1101 | 5..798 | 3785 | 98.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:09:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 132807..133263 | 343..798 | 1970 | 97.8 | Plus |
| X | 23542271 | X | 129080..129417 | 5..342 | 1690 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 18:09:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\Het-A | 6610 | Dvir\Het-A HETAVIR 6610bp | 5493..5528 | 421..456 | 108 | 77.8 | Plus |
FMO12326.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-10-09 09:33:33 Download gff for
FMO12326.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RhoGAP1A-RB | 299..1098 | 1..802 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:46:00 Download gff for
FMO12326.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RhoGAP1A-RE | 303..1102 | 1..802 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:51:46 Download gff for
FMO12326.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RhoGAP1A-RE | 303..1102 | 1..802 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:51:46 Download gff for
FMO12326.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 129076..129417 | 1..342 | 99 | -> | Plus |
| X | 132807..133264 | 343..802 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:46:00 Download gff for
FMO12326.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 25463..25804 | 1..342 | 99 | -> | Plus |
| arm_X | 29194..29651 | 343..802 | 97 | | Plus |
