FMO12330.5prime Sequence
955 bp (920 high quality bases) assembled on 2012-10-09
> FMO12330.5prime
GTCGACATGGATGTGCCCGATGACAATTTTGGGCCGTCAAAGCCGTGTGA
CAAGCAGCCCTTAGCTGGCAACTCTAGCAGCGCTACCAATTCATCGTCGC
ATACCGGTGGTAACGGTAACGTTGATTCCGCATTCGAATCATCTACAGCT
GCAGGACCTAGTTCCGGCGCCAATCAAAGTAGCACAGGCGGTGCTATAGA
TGAACAAGGTTCCATTGGTGAACAGAGTGCCGGCGTGGGACAAAACATTA
TTGAGGGCGACTTGCTGGTGTTAAATGCCAATTCCACAAACGTGGATCTT
TCGACTCACCGGGATGGCTCTAGCTTTAAAGACTCGAACACTGAGCAGGG
AAAAAAAAGTACTATGATTAAGACTTCAAAGACATTAAATGACAAGAGTC
AATTTGAACGCCGCAGACGCCGTGGCCGTCAACGTGAACGTCATCGTGAG
TCCAGCACGCATCGTGACGATCTTGAACCGTGCGATTTAGGTCTAATGGG
ATGGACTGGAGAATTCCCAAAGCTAACACCCATATCCAACATCGAAAGCA
ACTCGGATAAAGAACCGCTGTCGACGGCCAAGCCAGGTGTACTGCCATGG
AGTGGCCTAAAGGTTTTTCCGAGAGTGGAACCACAAGAGGAGACAGCGGC
AGGTACAACAAAGCCGGCTCATATCACTAATAAGTCTGAGGAGCAGCAGC
AGCAGCCGTCTCTAACAACGCCGATAATGACGTCGCCACTCGACGCCTCC
CAGGGGGAATTGGATGCAGCCATTAAAAGCCCTTTGAACGCAAAAAAAGT
CCAAATGCAACTGGTTATTGCAACACATCTCAAGGTCAGTACAACACCAA
ACAACATGCAGCATCAGACTTATACAACCAGGTTTGAAGATAAAAAGAGG
ATACCACCAGAAGCAGCCGGATGCTGATCTTACCCTTGGCCAAATCCCCT
TATGA
FMO12330.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:09:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2247-RD | 3560 | CG2247-RD | 124..1068 | 3..946 | 4370 | 98 | Plus |
| CG2247-RB | 3563 | CG2247-RB | 124..1068 | 3..946 | 4370 | 98 | Plus |
| CG2247-RA | 3767 | CG2247-RA | 124..1068 | 3..946 | 4370 | 98 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:09:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 11610474..11610832 | 361..3 | 1795 | 100 | Minus |
| X | 23542271 | X | 11609400..11609714 | 883..570 | 1295 | 96.2 | Minus |
| X | 23542271 | X | 11610202..11610413 | 570..359 | 1045 | 99.5 | Minus |
Blast to na_te.dros performed on 2014-11-28 18:09:30 has no hits.
FMO12330.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-10-09 09:33:35 Download gff for
FMO12330.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2247-RA | 117..1062 | 1..946 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:46:05 Download gff for
FMO12330.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2247-RA | 123..1068 | 1..946 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:51:53 Download gff for
FMO12330.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2247-RA | 123..1068 | 1..946 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:51:53 Download gff for
FMO12330.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 11609402..11609713 | 571..881 | 97 | <- | Minus |
| X | 11610202..11610413 | 359..570 | 99 | <- | Minus |
| X | 11610477..11610833 | 1..358 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:46:05 Download gff for
FMO12330.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 11503435..11503746 | 571..881 | 97 | <- | Minus |
| arm_X | 11504235..11504446 | 359..570 | 99 | <- | Minus |
| arm_X | 11504510..11504866 | 1..358 | 99 | | Minus |
