FMO12331.5prime Sequence
635 bp (598 high quality bases) assembled on 2012-10-09
> FMO12331.5prime
GTCGACATGTCGTTTGTGGGCGGGGGCGGGTGCGGTGGCCAGGACGTGCA
CAAGTTTGTGGAGGCCCTGCAGGCGGATTTCAAGACCCTCTCGCTGGAGA
CCAAGAAGAAGTATCCTCAGATCAAGGAGGCGTGCGAGGAGGCCATTTCC
AAGCTCTGCACAGCTGGCAGCAGCCAGCAAAACTCGGTGTACTACACCGT
CAACCAGATACTCTATCCGCTGGTGCAGGGATGCGAGACCAAGGACCTCA
AGATCATCAAGTTTTGCTTAGGCATGATGCAGCGGCTCATCACCCAGCAG
GTGGTGGACCAGAAGGGCGCCCTATACATCACCAACGCACTGTGGACCCT
AATGGAGAACAACATCGAGGAAGTCAAAGTGCTGCAAACAGTAACTCTTT
TGCTGACCACCATACGGTGGTGCACGGCGACACATTGGCCCAAGGCCTTA
TTTCTGTGCTTTCGCCTGCACTACGCCAAAAATCCCACAATTGTGAATAC
GGCCGGTGCCACCATCCGGCAGCTGGTGTCCCTGGTGTTTGAAGCGAGTG
TACCTGGAAAATGACTCGGTTTCCAGCCTCCAGCAGCACAGTCCAGTGGA
TCCGCAGCTGAAGAAGAAGGCCGAAATCACGATGT
FMO12331.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:09:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mon2-RC | 5479 | CG8683-RC | 196..825 | 6..635 | 2895 | 97.6 | Plus |
| mon2-RB | 5806 | CG8683-RB | 196..825 | 6..635 | 2895 | 97.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:09:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 8122872..8123247 | 635..260 | 1525 | 96 | Minus |
| 2L | 23513712 | 2L | 8123304..8123437 | 261..128 | 670 | 100 | Minus |
| 2L | 23513712 | 2L | 8123691..8123815 | 130..6 | 625 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 18:09:33 has no hits.
FMO12331.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-10-09 09:33:36 Download gff for
FMO12331.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8683-RB | 182..792 | 1..611 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:46:07 Download gff for
FMO12331.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mon2-RB | 191..801 | 1..611 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:51:55 Download gff for
FMO12331.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mon2-RB | 191..801 | 1..611 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:51:55 Download gff for
FMO12331.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 8122909..8123245 | 262..598 | 97 | <- | Minus |
| 2L | 8123304..8123435 | 130..261 | 100 | <- | Minus |
| 2L | 8123692..8123820 | 1..129 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:46:07 Download gff for
FMO12331.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 8122909..8123245 | 262..598 | 97 | <- | Minus |
| arm_2L | 8123304..8123435 | 130..261 | 100 | <- | Minus |
| arm_2L | 8123692..8123820 | 1..129 | 98 | | Minus |
