Clone FMO12332 Report

Search the DGRC for FMO12332

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:123
Well:32
Vector:pMK33-CFH-BD
Associated Gene/TranscriptCG8213-RB
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO12332.5prime Sequence

796 bp (793 high quality bases) assembled on 2012-10-09

> FMO12332.5prime
TCGACATGTTTAAGTGGGTTACGCCGGCCTCAACGGCGACGTTGTCCCGC
TGCACACTGCCAGCAACAACAGCAGCCACAACAACAACAACGGCGATGGC
AGCAACGAGAACAGCAACGACAACGACGAGAACAACAAGACCACAACTAC
TTTCCATCGCTTTAACAAGTTTAATAATAATAGTCGCATCATTTGTGCCG
ACAACAAGTGGATTTAGATCAATTGAAACGAATGGCGGTGGTCGCAAGCT
CTTTGGGGGCTATCGCATCACACCGAAGCACTGCCGTGCCACCAAGACGC
TGCCCAGCTCGGATCCACGGGCCAATGGACCCACCATCTGCATGTTTAAC
CACGAGTGCGCACAGCGGGGTGGCGAGGTGGTGGGCGCCTGCATGGACGG
CTTCCTCTTCGGCGCCTGCTGCCAGATCCCGCCCACCCACGAGTTGGCCA
GCACGCTGATTAACGAGGCGCAGAACGCCTACTTCCAGCAGCACCAGCAG
CAGACGAAGCTCCAGCAGTCAGCAGCCCAATCCTCGTTCGAAAGCTACGG
CGAACAGCAACAGTCATTGAGCGAGGAGCAGGTGGCACAGCAGCCGTCGC
AGAACATCTACGATCAGCAGAACCTGGACAAGGTGTACCATCAACTGGAC
AGCAGCAGTAGCATCAGTCCACCCCAACGGAGCCTACGGCGATGAGCCGC
AGCAGCAGGAGTATCAGTCGGAGTCGGAACACCCGTAAGGGATGAGAATG
CGTATCCCTACCAGCATTTCTCCACCGAGGCCATTCATTCCCATCC

FMO12332.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:09:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG8213-RD 6637 CG8213-RD 741..1524 4..787 3770 99 Plus
CG8213-RC 6171 CG8213-RC 416..1199 4..787 3770 99 Plus
CG8213-RB 6439 CG8213-RB 741..1524 4..787 3770 99 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:09:35
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 8974895..8975445 787..237 2505 98.6 Minus
2R 25286936 2R 8984925..8985160 239..4 1180 100 Minus
Blast to na_te.dros performed on 2014-11-28 18:09:36 has no hits.

FMO12332.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-10-09 09:33:37 Download gff for FMO12332.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8213-RC 395..1192 1..796 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:46:09 Download gff for FMO12332.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8213-RB 737..1534 1..796 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:51:56 Download gff for FMO12332.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8213-RB 737..1534 1..796 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:51:56 Download gff for FMO12332.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 8974885..8975444 238..796 98 <- Minus
2R 8984927..8985160 1..237 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:46:09 Download gff for FMO12332.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 4862390..4862949 238..796 98 <- Minus
arm_2R 4872432..4872665 1..237 98   Minus