FMO12332.5prime Sequence
796 bp (793 high quality bases) assembled on 2012-10-09
> FMO12332.5prime
TCGACATGTTTAAGTGGGTTACGCCGGCCTCAACGGCGACGTTGTCCCGC
TGCACACTGCCAGCAACAACAGCAGCCACAACAACAACAACGGCGATGGC
AGCAACGAGAACAGCAACGACAACGACGAGAACAACAAGACCACAACTAC
TTTCCATCGCTTTAACAAGTTTAATAATAATAGTCGCATCATTTGTGCCG
ACAACAAGTGGATTTAGATCAATTGAAACGAATGGCGGTGGTCGCAAGCT
CTTTGGGGGCTATCGCATCACACCGAAGCACTGCCGTGCCACCAAGACGC
TGCCCAGCTCGGATCCACGGGCCAATGGACCCACCATCTGCATGTTTAAC
CACGAGTGCGCACAGCGGGGTGGCGAGGTGGTGGGCGCCTGCATGGACGG
CTTCCTCTTCGGCGCCTGCTGCCAGATCCCGCCCACCCACGAGTTGGCCA
GCACGCTGATTAACGAGGCGCAGAACGCCTACTTCCAGCAGCACCAGCAG
CAGACGAAGCTCCAGCAGTCAGCAGCCCAATCCTCGTTCGAAAGCTACGG
CGAACAGCAACAGTCATTGAGCGAGGAGCAGGTGGCACAGCAGCCGTCGC
AGAACATCTACGATCAGCAGAACCTGGACAAGGTGTACCATCAACTGGAC
AGCAGCAGTAGCATCAGTCCACCCCAACGGAGCCTACGGCGATGAGCCGC
AGCAGCAGGAGTATCAGTCGGAGTCGGAACACCCGTAAGGGATGAGAATG
CGTATCCCTACCAGCATTTCTCCACCGAGGCCATTCATTCCCATCC
FMO12332.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:09:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8213-RD | 6637 | CG8213-RD | 741..1524 | 4..787 | 3770 | 99 | Plus |
CG8213-RC | 6171 | CG8213-RC | 416..1199 | 4..787 | 3770 | 99 | Plus |
CG8213-RB | 6439 | CG8213-RB | 741..1524 | 4..787 | 3770 | 99 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:09:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 8974895..8975445 | 787..237 | 2505 | 98.6 | Minus |
2R | 25286936 | 2R | 8984925..8985160 | 239..4 | 1180 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 18:09:36 has no hits.
FMO12332.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-10-09 09:33:37 Download gff for
FMO12332.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8213-RC | 395..1192 | 1..796 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:46:09 Download gff for
FMO12332.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8213-RB | 737..1534 | 1..796 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:51:56 Download gff for
FMO12332.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8213-RB | 737..1534 | 1..796 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:51:56 Download gff for
FMO12332.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 8974885..8975444 | 238..796 | 98 | <- | Minus |
2R | 8984927..8985160 | 1..237 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:46:09 Download gff for
FMO12332.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 4862390..4862949 | 238..796 | 98 | <- | Minus |
arm_2R | 4872432..4872665 | 1..237 | 98 | | Minus |