FMO12338.5prime Sequence
949 bp (785 high quality bases) assembled on 2012-10-09
> FMO12338.5prime
AGTCGACATGATGACGCCAGAATCGAAAGCAATACAGCCGGCAGCAGCAA
CAACAAAGCAAACAGCAGAAGCAACAGCAACAACAACAATGGCTCACACA
CAACAAAAGTCGCAGTTGTCAACGTTGGCGAAAACAACAACGACAACGGC
AACGAATAAGGCGGCCAAAAGCGTTGTCAGCAATGCAAATAGCAGTGGCA
ACAATTCGAGCAAAAAGCTGGCTTTGTCTCAGTCTCAGAAAACAACAACA
ACAACAACACCACCAACGACGACGACAACAACAACAGCAGCAGCAGCAGC
AGAGGCAACAACTAATGCTGATAAAATGCAAAAGCAACAGCAACTGAAGC
AGCAACTTTTCGCTGCCTGCAGCATTAAAAGTAAAAAGTGAAAACACATT
AGCAACTACTGCGAATGCAGCATTAGCAGCAGCAACAACCACAACAACAA
CAGCAACACCAGCTCTTTGTTCACCGGCAAAGCAGCAAAAACAATATTAG
AAAAACGGCATAAAGAAAGGAATCCACGCCTCCGGCTGTCGAATCCGTTG
AGGCCTCCTCCTCATCGTCATCCTCCTCCTCGTCCTCCCTCATCATCATC
GTCCTCGTGGCCGACGACAAGGAGAGCCACTTCAGAGGACGCCAGCAGCA
ATGGTGGCGCCTCCGCCGACGAGGAGAAGTCGGAGGAGGACCCACCGGCA
GCTGTGGCTGCGTCTTCAACGGCGACCACGACTTCCGATTTGGCCACAAC
TTCAAGGCCACGCCTCGTCCTTCTAACGGCCTTAATTCGCAACATCATTC
TGTCACCTGTGCCAGGGATATCTGATCATTGCAACCCCATCGTCGAGTGT
CTTGCACTCTTCTGCCACAGTTGCCTCTTTAATCACTGCGAAGGAGCGAT
TCTTGCCGCGCTGCAGATTGTCATCACAACGCCAGTCCGAACATCAAAT
FMO12338.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:09:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Psc-RC | 6332 | CG3886-RC | 1006..1945 | 8..949 | 4120 | 96.7 | Plus |
Psc-RB | 5671 | CG3886-RB | 670..1609 | 8..949 | 4120 | 96.7 | Plus |
Psc-RA | 6007 | CG3886-RA | 1006..1945 | 8..949 | 4120 | 96.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:09:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 12977325..12978163 | 852..8 | 3655 | 97.4 | Minus |
Blast to na_te.dros performed 2014-11-28 18:09:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2586..2985 | 60..463 | 393 | 60.4 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2388..2855 | 18..488 | 389 | 57.5 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2204..2542 | 138..493 | 362 | 60.2 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2302..2665 | 67..458 | 356 | 59 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2303..2678 | 125..506 | 310 | 56.8 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2306..2673 | 47..421 | 305 | 58.5 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6725..6953 | 276..495 | 304 | 64.4 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6527..6944 | 53..460 | 303 | 58.9 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6732..6923 | 324..509 | 241 | 62.7 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6707..6909 | 317..510 | 238 | 61.5 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6659..6852 | 303..502 | 211 | 59.9 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2325..2477 | 329..497 | 205 | 63.3 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6659..6846 | 332..516 | 193 | 60.2 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2313..2412 | 367..463 | 187 | 67 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1194..1589 | 45..456 | 185 | 55.3 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 946..1185 | 231..470 | 185 | 58 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6734..6896 | 367..527 | 182 | 59.9 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2306..2421 | 411..527 | 177 | 63.6 | Plus |
BS | 5142 | BS BS 5142bp | 1937..2142 | 329..523 | 175 | 57.8 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6704..6821 | 409..527 | 169 | 62.5 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 980..1149 | 335..505 | 167 | 58.4 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6727..6822 | 417..516 | 166 | 67.3 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6413..6578 | 279..464 | 165 | 59.7 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1053..1151 | 365..463 | 161 | 65 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1073..1179 | 397..502 | 154 | 61.7 | Plus |
Dvir\Het-A | 6610 | Dvir\Het-A HETAVIR 6610bp | 3279..3396 | 406..520 | 151 | 63.6 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1512..1584 | 391..463 | 149 | 67.1 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1530..1575 | 418..463 | 149 | 80.4 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 5626..5680 | 394..449 | 142 | 75 | Plus |
Doc3-element | 4740 | Doc3-element DOC3 4740bp | 529..632 | 46..152 | 140 | 63 | Plus |
gypsy11 | 4428 | gypsy11 GYPSY11 4428bp | 983..1051 | 417..484 | 135 | 68.1 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 982..1179 | 239..438 | 129 | 57.8 | Plus |
ZAM | 8435 | ZAM DMZAM 8435bp Derived from AJ000387 (e1237231) ((Rel. 54, Last updated, Version 1). | 2629..2728 | 404..502 | 128 | 61.4 | Plus |
Dyak\TART | 8444 | Dyak\TART TARTYAK 8444bp | 6034..6094 | 401..461 | 124 | 71 | Plus |
TART-C | 11124 | TART-C TARTC 11124bp | 7489..7546 | 401..458 | 118 | 71.2 | Plus |
Doc2-element | 4789 | Doc2-element DOC2 4789bp | 538..592 | 403..457 | 113 | 67.3 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6399..6486 | 377..466 | 112 | 60 | Plus |
gypsy11 | 4428 | gypsy11 GYPSY11 4428bp | 972..1011 | 418..457 | 110 | 75 | Plus |
FMO12338.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-10-09 09:33:40 Download gff for
FMO12338.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Psc-RA | 995..1940 | 1..949 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:46:15 Download gff for
FMO12338.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Psc-RA | 1000..1945 | 1..949 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:52:01 Download gff for
FMO12338.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Psc-RA | 1000..1945 | 1..949 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:52:01 Download gff for
FMO12338.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 12977317..12978169 | 1..860 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:46:15 Download gff for
FMO12338.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 8864822..8865674 | 1..860 | 97 | | Minus |