FMO12339.5prime Sequence
596 bp (596 high quality bases) assembled on 2012-10-09
> FMO12339.5prime
AGTCGACATGCACATCAAGCAGATTATTATACAAGGCTTCAAGAGTTACA
AGGACCAGACGGTGGTGGAACCATTCGACAAGCGCCATAACGTTGTTGTT
GGACGTAATGGCTCCGGGAAGAGCAACTTCTTCTACGCCATCCAGTTTGT
GCTAAGCGATGAGTTCACCCACTTGCGGCCGGAGCAGCGTCAGTCGCTTC
TGCACGAGGGAACAGGTGCCCGCGTCATCTCCGCCTATGTGGAGATCATC
TTCGACAACTCGGACAACCGAGTTCCAATCGACAAAGAAGAGATCTTTCT
GCGGCGCGTGATTGGCGCCAAAAAGGACCAGTACTTCCTCAACAAGAAGG
TGGTGCCGCGCAATGAGGTGGTCAATCTGCTGGAATCGGCTGGTTTTTCC
AGTTCAAATCCCTACTACATTGTCAAGCAGGGCAAAATCAATCAGATGGC
AACTGCCGCCGATTCCTATCGTCTCAAGCTGCTACGCGAAGTCGCGGGAA
CGCGTGTTTACGACGAAACGGAAGGAGGAGTCGTTAAATCTATTGCGCGA
GACGGACAGCAAGGTGGAGAAAAATCAGCGAGTACCTAAAGACCAT
FMO12339.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:09:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| SMC3-RA | 4020 | CG9802-RA | 74..660 | 8..596 | 2895 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:09:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 16592430..16592746 | 596..278 | 1495 | 99.4 | Minus |
| X | 23542271 | X | 16592944..16593084 | 277..137 | 705 | 100 | Minus |
| X | 23542271 | X | 16593160..16593277 | 137..20 | 590 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 18:09:54 has no hits.
FMO12339.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-10-09 09:33:40 Download gff for
FMO12339.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cap-RA | 58..650 | 1..596 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:46:17 Download gff for
FMO12339.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cap-RA | 68..660 | 1..596 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:52:02 Download gff for
FMO12339.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| SMC3-RA | 68..660 | 1..596 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:52:02 Download gff for
FMO12339.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 16592430..16592746 | 278..596 | 99 | <- | Minus |
| X | 16592944..16593083 | 138..277 | 100 | <- | Minus |
| X | 16593160..16593274 | 23..137 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:46:17 Download gff for
FMO12339.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 16486463..16486779 | 278..596 | 99 | <- | Minus |
| arm_X | 16486977..16487116 | 138..277 | 100 | <- | Minus |
| arm_X | 16487193..16487307 | 23..137 | 100 | <- | Minus |
