FMO12340.5prime Sequence
792 bp (737 high quality bases) assembled on 2012-10-09
> FMO12340.5prime
GTCGACATGGAAGATGTGGAAATCAAGCCTCGCGGCTATCAACTTCGCCT
GGTTGACCACCTAACGAAGAGCAATGGCATTGTCTACCTGCCCACAGGAT
CTGGGAAAACGTTCGTGGCCATCCTGGTCCTAAAGCGCTTCTCGCAGGAC
TTTGACAAACCCATCGAAAGCGGCGGAAAGCGTGCGTTGTTCATGTGCAA
TACTGTGGAATTGGCCCGACAACAGGCGATGGCCGTCAGGCGGTGCACCA
ACTTTAAGGTTGGCTTTTATGTGGGTGAACAGGGAGTGGATGACTGGACG
CGCGGAATGTGGAGTGATGAAATCAAAAAAAACCAAGTTCTTGTTGGCAC
AGCCCAGGTCTTTTTGGACATGGTCACCCAGACGTACGTGGCTTTAAGCT
CCCTGAGCGTTGTCATCATAGACGAGTGCCACCACGGCACTGGTCACCAC
CCATTTCGTTTATTTCATGCGATTGTTCACTATCGCTAATCAAACAAAAA
TTGCCGCGCGTGGTGGGTCTCACCGGGGTGTTAATCAAGGGAAATGAAAT
TACGAACGTGGCCACGAAACTTAAAGAGCTAGAGATCACATATCGGGGAA
ACATCATTACCGTGTCCGACACCAAGGAGATGGAAAACGTGATGCTGTAC
GCCACCAAGCCCACAGAAGGTCATGGTGTCTTTCCAATCAAGAGCAAGTG
CTTCCGGGTACAAGGTAATAGCGCAGAATGAAAAGTCCATTATCCTTAAA
CCTCATGATATTGTCGTTCACCGATCAAAGGTCAAAGTCATT
FMO12340.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:09:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dcr-2-RB | 5681 | CG6493-RB | 100..893 | 7..792 | 3510 | 97.1 | Plus |
| Dcr-2-RA | 5684 | CG6493-RA | 100..893 | 7..792 | 3510 | 97.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:09:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 17580166..17580476 | 649..337 | 1435 | 98.7 | Minus |
| 2R | 25286936 | 2R | 17580914..17581097 | 338..155 | 905 | 99.5 | Minus |
| 2R | 25286936 | 2R | 17581215..17581347 | 158..26 | 665 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 18:09:56 has no hits.
FMO12340.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-10-09 09:33:41 Download gff for
FMO12340.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dcr-2-RA | 75..874 | 1..792 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:46:19 Download gff for
FMO12340.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dcr-2-RA | 94..893 | 1..792 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:52:04 Download gff for
FMO12340.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dcr-2-RA | 94..893 | 1..792 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:52:04 Download gff for
FMO12340.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 17580169..17580476 | 337..646 | 98 | <- | Minus |
| 2R | 17580916..17581093 | 159..336 | 100 | <- | Minus |
| 2R | 17581215..17581345 | 28..158 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:46:19 Download gff for
FMO12340.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 13467674..13467981 | 337..646 | 98 | <- | Minus |
| arm_2R | 13468421..13468598 | 159..336 | 100 | <- | Minus |
| arm_2R | 13468720..13468850 | 28..158 | 100 | <- | Minus |
