FMO12341.5prime Sequence
716 bp (716 high quality bases) assembled on 2012-10-09
> FMO12341.5prime
GTCGACATGGTCGATCCATTAAAAATCTTTTGGGTTTTGACAAATAGCAC
CTATTTGGTTACAAAATTTGTACGCATTGGTATTGCCGACAAAAACGATT
CACCGCCGTATTTCGATAGATTTCTGTACGAAACTGAAATCGATGAAAAT
GCCGACTTGCAGAGCACTGTCCTCACTGTCAACGCCAAGGATCACAATGA
GTCGACGAATATTCGATACCAGATCACAGGCGGTAACATAGGCAATGCAT
TTGCCGTACAGAACACCACCGGTGTCATTTACGTGGCAAGTCCACTTGAC
TACGAAACGAGGCCAAGGTATGAACTGCGCCTGGAGGCAACTCGCAATCG
CAAAAATAACTACACCACCGTTGTGATCAACGTTCGCGATGTCAACGATA
ATCCACCGGTATTCGATCGTCAAACATATCGTACACAAATCACTGAGGAA
GACGATCGCAATCTGCCCAAAACGCATTCTGCAGGTCACAGCCACCGATG
GCGATGTAGATAGACCAATAAATATTGTATATTTTCCTGACTGGTCAGGG
CATCGACCCTGATAATCCAGCGAATAGTAAATTTTGATATAAATCGCACG
ACGGGCGATATTTTTGTTCTCAGCCCCCTGGACCGAGATCAGCCCCAATG
GGAGGCCACAGTGGCGCTTTACAGTATTTGCCCAGGACGAGGGTGGCGAG
GGGCTGGTAGGCTATG
FMO12341.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:10:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CadN2-RD | 7914 | CG42829-RD | 1181..1886 | 7..716 | 3420 | 99.2 | Plus |
| CadN2-RC | 7220 | CG42829-RC | 487..1192 | 7..716 | 3420 | 99.2 | Plus |
| CadN-RL | 10427 | CG7100-RL | 4807..5455 | 64..716 | 455 | 72.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:09:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 17809236..17809403 | 486..318 | 795 | 99.4 | Minus |
| 2L | 23513712 | 2L | 17815574..17815718 | 202..58 | 725 | 100 | Minus |
| 2L | 23513712 | 2L | 17806370..17806508 | 622..482 | 605 | 98.6 | Minus |
| 2L | 23513712 | 2L | 17810823..17810938 | 318..203 | 580 | 100 | Minus |
| 2L | 23513712 | 2L | 17803407..17803497 | 716..625 | 410 | 98.9 | Minus |
| 2L | 23513712 | 2L | 17827421..17827472 | 58..7 | 260 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 18:09:59 has no hits.
FMO12341.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-10-09 09:33:42 Download gff for
FMO12341.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CadN2-RC | 481..1192 | 1..716 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:46:21 Download gff for
FMO12341.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CadN2-RC | 481..1192 | 1..716 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:52:05 Download gff for
FMO12341.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CadN2-RC | 481..1192 | 1..716 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:52:05 Download gff for
FMO12341.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 17815574..17815717 | 59..202 | 100 | <- | Minus |
| 2L | 17827421..17827478 | 1..58 | 94 | | Minus |
| 2L | 17809238..17809402 | 319..484 | 99 | <- | Minus |
| 2L | 17810823..17810938 | 203..318 | 100 | <- | Minus |
| 2L | 17803407..17803497 | 625..716 | 98 | <- | Minus |
| 2L | 17806368..17806505 | 485..624 | 97 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:46:21 Download gff for
FMO12341.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 17815574..17815717 | 59..202 | 100 | <- | Minus |
| arm_2L | 17827421..17827478 | 1..58 | 94 | | Minus |
| arm_2L | 17809238..17809402 | 319..484 | 99 | <- | Minus |
| arm_2L | 17810823..17810938 | 203..318 | 100 | <- | Minus |
| arm_2L | 17803407..17803497 | 625..716 | 98 | <- | Minus |
| arm_2L | 17806368..17806505 | 485..624 | 97 | <- | Minus |
