FMO12344.5prime Sequence
834 bp (769 high quality bases) assembled on 2012-10-09
> FMO12344.5prime
AGTCGACATGATGAGCGATGTGGCGGGTGCGGCCGCTCCAGGTGGTACAC
CAGGTCAACCGCAGCAGGAGCAGGAACAGTCTTTGGCGGAGGCTGCTCCG
CGTACACCGACGCTTGCGAATCCTCCTCCATCCTCACAGGAGCTGGGTCG
GACCCCCAACCAGGAGAGCCGCCATAACGCAAATTCCCACTCCCGTCGAT
CGGGTGGTGGCCAGGTGCCATCGAAAGCCCAGGGTAACACCGAGTCCCAG
TTCTTCTTAGAGGATGGGGTTTTTCGCATTGATCGGCGCGGTCGCGTCCA
TTTTGGCTTGGTAACCGCAACGACCGAGACCTATTCCTCCTCCGAAGAGG
AAGATGTCGATTCGCTGTCCAGGGGCGAGGTGCGTGTGGCCTTCTATCCG
GGTGGCAAGGAGATGGTGATGACGGAACAGTCGATTGGTCTGGCGGATCG
CACCCTAATGCCAGGCGATGTGGTGCGGAGGCGTCTGCCAGGAGAAAACG
TTTTGGCTGGCCAGGCGGGCTACGTGCGGGATGTCAATGTACGCGCCGAT
GTTATGGTAATGGGCTCCAGAATGGTCATTAAAAATGTGCCCGCCGAGCG
ACTGCGTCCGATATCCGAGTGGAACCAATATGTGACTCTCTGCATGGACA
CCTGGATAGGCACCATCATAGACTTAATTGAGTGCGCTGTGCTCAAATCA
TCCCAACGGTGCCCCGTGTGGAAATCACCTCAAAGATTTCCACAAGTTTA
AGGATGCTGTGTCTCGATTGCGATCGCTGGTCTTCAATCCGATGCCTTCT
TTCCAGAAAATTTGTATCCGTCGAAGCCGCCCCT
FMO12344.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:10:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10254-RC | 4940 | CG10254-RC | 277..1107 | 6..833 | 3765 | 97.6 | Plus |
CG10254-RA | 4997 | CG10254-RA | 277..1107 | 6..833 | 3765 | 97.6 | Plus |
CG10254-RB | 4827 | CG10254-RB | 107..937 | 6..833 | 3765 | 97.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:10:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 23694023..23694450 | 433..6 | 2140 | 100 | Minus |
3R | 32079331 | 3R | 23693599..23693862 | 696..433 | 1260 | 98.5 | Minus |
3R | 32079331 | 3R | 23693426..23693525 | 810..713 | 230 | 91.1 | Minus |
Blast to na_te.dros performed on 2014-11-28 18:10:06 has no hits.
FMO12344.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-10-09 09:33:44 Download gff for
FMO12344.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10254-RA | 201..1016 | 1..816 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:46:27 Download gff for
FMO12344.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10254-RB | 103..918 | 1..816 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:52:12 Download gff for
FMO12344.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10254-RB | 103..918 | 1..816 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:52:12 Download gff for
FMO12344.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 23693599..23693861 | 434..696 | 98 | <- | Minus |
3R | 23694023..23694453 | 1..433 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:46:27 Download gff for
FMO12344.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 19519321..19519583 | 434..696 | 98 | <- | Minus |
arm_3R | 19519745..19520175 | 1..433 | 99 | | Minus |