Clone FMO12344 Report

Search the DGRC for FMO12344

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:123
Well:44
Vector:pMK33-CFH-BD
Associated Gene/TranscriptCG10254-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO12344.5prime Sequence

834 bp (769 high quality bases) assembled on 2012-10-09

> FMO12344.5prime
AGTCGACATGATGAGCGATGTGGCGGGTGCGGCCGCTCCAGGTGGTACAC
CAGGTCAACCGCAGCAGGAGCAGGAACAGTCTTTGGCGGAGGCTGCTCCG
CGTACACCGACGCTTGCGAATCCTCCTCCATCCTCACAGGAGCTGGGTCG
GACCCCCAACCAGGAGAGCCGCCATAACGCAAATTCCCACTCCCGTCGAT
CGGGTGGTGGCCAGGTGCCATCGAAAGCCCAGGGTAACACCGAGTCCCAG
TTCTTCTTAGAGGATGGGGTTTTTCGCATTGATCGGCGCGGTCGCGTCCA
TTTTGGCTTGGTAACCGCAACGACCGAGACCTATTCCTCCTCCGAAGAGG
AAGATGTCGATTCGCTGTCCAGGGGCGAGGTGCGTGTGGCCTTCTATCCG
GGTGGCAAGGAGATGGTGATGACGGAACAGTCGATTGGTCTGGCGGATCG
CACCCTAATGCCAGGCGATGTGGTGCGGAGGCGTCTGCCAGGAGAAAACG
TTTTGGCTGGCCAGGCGGGCTACGTGCGGGATGTCAATGTACGCGCCGAT
GTTATGGTAATGGGCTCCAGAATGGTCATTAAAAATGTGCCCGCCGAGCG
ACTGCGTCCGATATCCGAGTGGAACCAATATGTGACTCTCTGCATGGACA
CCTGGATAGGCACCATCATAGACTTAATTGAGTGCGCTGTGCTCAAATCA
TCCCAACGGTGCCCCGTGTGGAAATCACCTCAAAGATTTCCACAAGTTTA
AGGATGCTGTGTCTCGATTGCGATCGCTGGTCTTCAATCCGATGCCTTCT
TTCCAGAAAATTTGTATCCGTCGAAGCCGCCCCT

FMO12344.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:10:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG10254-RC 4940 CG10254-RC 277..1107 6..833 3765 97.6 Plus
CG10254-RA 4997 CG10254-RA 277..1107 6..833 3765 97.6 Plus
CG10254-RB 4827 CG10254-RB 107..937 6..833 3765 97.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:10:06
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 23694023..23694450 433..6 2140 100 Minus
3R 32079331 3R 23693599..23693862 696..433 1260 98.5 Minus
3R 32079331 3R 23693426..23693525 810..713 230 91.1 Minus
Blast to na_te.dros performed on 2014-11-28 18:10:06 has no hits.

FMO12344.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-10-09 09:33:44 Download gff for FMO12344.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10254-RA 201..1016 1..816 97   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:46:27 Download gff for FMO12344.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10254-RB 103..918 1..816 97   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:52:12 Download gff for FMO12344.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10254-RB 103..918 1..816 97   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:52:12 Download gff for FMO12344.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 23693599..23693861 434..696 98 <- Minus
3R 23694023..23694453 1..433 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:46:27 Download gff for FMO12344.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 19519321..19519583 434..696 98 <- Minus
arm_3R 19519745..19520175 1..433 99   Minus