FMO12349.5prime Sequence
1054 bp (859 high quality bases) assembled on 2012-10-09
> FMO12349.5prime
AGTCGACATGTTTTCCACCACCACACACTCCGTGCCCTACCTGTACCTAG
GCAACTTCAGCAGAAAGCCGCACTACTACTCCGTTAATCGAACCAAGCTG
CACGGGAGCGCGGGAGCTGCCCGGTTGTCCAAGTCCACGTCCACGTCCAG
CCGGAGTCATGACCTAGTGCTCGACCTGCGGAACCTGCTGAGCCGTTCGA
GCGCCAGTATACAGGGCATGGTGGAGAGGGCGGCTCGACTGAATGGCATT
CTCGACCGGCGGCTGGTCGATGATGTGCTGGCCAAGGTGACGAGCATGCT
GCCCTCCATGCGCGATGTCCGAGTCACGTTGGAGGAGTCGGCCACACAGA
TCGGTCGTGTCCAGCTGCAAAATTATCAGTTCGAAGTTTCGCTAACCGGT
GCAGCAGGTTCCGTGCCCACAGGCGCCAATGTCAAGGTGATTCCAACTAT
TACACTAGGTCTTCTTCGTCCGCTCTTCTCACAACAACAGCTAAATCAGA
TACGTGGCTTTAAGACGGATCGTTCCATTGAGGCGGAACAAAAGCGCAAT
CCCACAATGACCTCCCGACTAAAGAATGCTCTGGCCAACTCGCCCCAGCG
TCTGGATGGGGACACACCCCTTCAGGCTGAAAAAACTGAGACGGCTGCTG
GCCAAATCCCGAAGAGCATGGATTTAATAAAGCCGAGAGCCTGAAAATTG
CCTTTGCCCGAGGGCTACTTGCCGCCGCTAACTCGGAGGACTCTCCAAAA
TCAGGAAAAACTATGAAATATCTGAAGACTTTGCAGACTATCGTCGTTAT
CGTCGTGTTCTTAGGCATTTTCCTGAACTTCTTTACAACCTCCAATGGAT
CCGTATTTCCGCACCATACAACTGGGCAACCTGTTGAAGTGGAACCCTGA
GGAAATCAACGTCAACTTTTGAGAATGCAAGGGTTGCCGACAAACCCAAT
CAGGAACTCACGTAGTCTGTTGAAATCCCGGAAGAAGCCCTGAAAAAGTT
CTCAAAATTGGGCGAGAAAACCTACGAAAGGGTAGTTGACCTCCCGGGTG
TGAC
FMO12349.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:10:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3499-RC | 2515 | CG3499-RC | 107..1106 | 8..1014 | 4410 | 96.7 | Plus |
| CG3499-RD | 2940 | CG3499-RD | 306..1302 | 8..1014 | 4370 | 96.5 | Plus |
| CG3499-RB | 2503 | CG3499-RB | 107..1094 | 8..1014 | 4225 | 95.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:10:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 22885414..22885812 | 432..34 | 1995 | 100 | Minus |
| 2R | 25286936 | 2R | 22885053..22885243 | 685..493 | 865 | 99 | Minus |
| 2R | 25286936 | 2R | 22884721..22884804 | 859..776 | 390 | 97.6 | Minus |
| 2R | 25286936 | 2R | 22884908..22885000 | 777..685 | 370 | 97.9 | Minus |
| 2R | 25286936 | 2R | 22885297..22885356 | 492..433 | 285 | 98.3 | Minus |
Blast to na_te.dros performed on 2014-11-28 18:10:14 has no hits.
FMO12349.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-10-09 09:33:47 Download gff for
FMO12349.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3499-RC | 386..1294 | 1..914 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:46:34 Download gff for
FMO12349.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3499-RC | 102..1010 | 1..914 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:52:17 Download gff for
FMO12349.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3499-RC | 102..1010 | 1..914 | 98 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:52:17 Download gff for
FMO12349.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 22885054..22885243 | 493..684 | 98 | <- | Minus |
| 2R | 22884720..22884802 | 778..861 | 96 | <- | Minus |
| 2R | 22884908..22885000 | 685..777 | 97 | <- | Minus |
| 2R | 22885297..22885356 | 433..492 | 98 | <- | Minus |
| 2R | 22885414..22885811 | 35..432 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:46:34 Download gff for
FMO12349.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 18772243..18772325 | 778..861 | 96 | <- | Minus |
| arm_2R | 18772431..18772523 | 685..777 | 97 | <- | Minus |
| arm_2R | 18772577..18772766 | 493..684 | 98 | <- | Minus |
| arm_2R | 18772820..18772879 | 433..492 | 98 | <- | Minus |
| arm_2R | 18772937..18773334 | 35..432 | 100 | <- | Minus |
