FMO12355.5prime Sequence
490 bp (486 high quality bases) assembled on 2012-10-09
> FMO12355.5prime
AGTCGACATGGATGCCATCAAGAAGAAGATGCAAGCGATGAAAGTCGACA
AGGACGGAGCTCTGGAGCGCGCTCTCGTCTGCGAGCAGGAGGCACGCGAT
GCTAACACCCGCGCCGAGAAGGCCGAGGAGGAGGCTCGCCAGCTGCAGAA
GAAGATCCAGACCGTTGAGAACGAGCTGGATCAGACCCAGGAAGCCCTGA
CCCTGGTCACCGGCAAGCTGGAGGAGAAGAACAAGGCTCTGCAGAACGCC
GAATCCGAGGTTGCCGCTCTGAACCGTCGCATCCAGTTGCTCGAAGAAGA
CTTGGAGCGCTCTGAGGAGCGTCTGGGCTCCGCCACAGCCAAGCTGTCGG
AAGCCTCTCAGGCCGCCGATGAGAGCGAACGTGCTCGCAAAATTCTTGAG
AACCGCGCCCTTGCCGATGAAGAACGCTTGGACGCTCTCGAGAATCTGCT
GATTGAATCGCGTTTCCTTGCTGAGGAGGCTGACAGAAAT
FMO12355.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:10:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Tm1-RO | 1503 | CG4898-RO | 338..824 | 5..490 | 2335 | 98.8 | Plus |
| Tm1-RM | 1253 | CG4898-RM | 88..574 | 5..490 | 2335 | 98.8 | Plus |
| Tm1-RG | 2485 | CG4898-RG | 521..1007 | 5..490 | 2335 | 98.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:10:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 15295113..15295246 | 248..381 | 670 | 100 | Plus |
| 3R | 32079331 | 3R | 15285227..15285355 | 120..248 | 645 | 100 | Plus |
| 3R | 32079331 | 3R | 15284646..15284763 | 5..122 | 590 | 100 | Plus |
| 3R | 32079331 | 3R | 15296590..15296694 | 381..485 | 450 | 95.2 | Plus |
Blast to na_te.dros performed on 2014-11-28 18:10:20 has no hits.
FMO12355.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-10-09 09:33:49 Download gff for
FMO12355.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tm1-RJ | 96..587 | 1..490 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:46:37 Download gff for
FMO12355.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tm1-RG | 516..1007 | 1..490 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:52:20 Download gff for
FMO12355.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tm1-RG | 516..1007 | 1..490 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:52:20 Download gff for
FMO12355.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 15295113..15295246 | 248..381 | 100 | -> | Plus |
| 3R | 15296591..15296700 | 382..490 | 94 | | Plus |
| 3R | 15284641..15284762 | 1..121 | 97 | -> | Plus |
| 3R | 15285229..15285354 | 122..247 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:46:37 Download gff for
FMO12355.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 11120835..11120968 | 248..381 | 100 | -> | Plus |
| arm_3R | 11110363..11110484 | 1..121 | 97 | -> | Plus |
| arm_3R | 11110951..11111076 | 122..247 | 100 | -> | Plus |
| arm_3R | 11122313..11122422 | 382..490 | 94 | | Plus |
