FMO12356.5prime Sequence
556 bp (556 high quality bases) assembled on 2012-10-09
> FMO12356.5prime
GTCGACATGTGGCATTGGAGTTTGTTGTGTGTTTTCCTACTTGTTCCGTT
GGCGAATTCCACGGCTCCAATAAGTTTTGAGGCAAATCCGGACACCAAAC
GTCTCTATGATGATTTGTTGAGCAACTACAATCGATTGATTAGGCCCGTT
GTGAACAACACGGAGACCCTGACGGTTTGGTTAGGTCTGAAATTGTCTCA
GCTGATTGAGGTCAATCTGAAGAATCAGGTGATGACCACCAATCTGTGGG
TGAAGCAGCGCTGGTTCGACTACAAGTTGCGATGGGATCCAGAGGAATAC
GGCGGAGTTGAACAGCTGTATGTGCCATCTGAGCACATTTGGGTACCGGA
CATTGTGTTGTACAACAACTGGGATGGCAACTATGAAGTAACTCTGATGA
CGAAAGCCACTCTGAAGTATACGGGAGAAGTCTTTTGGGAGCCATCTGCT
ATATACAAGTCATCCTGTGAGATGAATGTCGAATACTTTCCGTACGACGA
ACAAATTTGCTTCATGAAATTCGGTTCATGGACCTACATGGTTCCCCAAG
TGGATC
FMO12356.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:10:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| nAChRbeta2-RB | 4018 | CG6798-RB | 137..686 | 7..556 | 2675 | 99.3 | Plus |
| nAChRbeta2-RA | 1892 | CG6798-RA | 137..686 | 7..556 | 2675 | 99.3 | Plus |
| nAChRalpha1-RC | 11027 | CG5610-RC | 1658..2003 | 199..543 | 355 | 74.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:10:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 24514494..24514688 | 258..64 | 975 | 100 | Minus |
| 3R | 32079331 | 3R | 24514084..24514252 | 556..388 | 770 | 97 | Minus |
| 3R | 32079331 | 3R | 24514308..24514440 | 389..257 | 665 | 100 | Minus |
| 3R | 32079331 | 3R | 24514913..24514970 | 64..7 | 290 | 100 | Minus |
| X | 23542271 | X | 8307006..8307172 | 368..202 | 265 | 77.2 | Minus |
| 3R | 32079331 | 3R | 24407330..24407494 | 537..373 | 195 | 74.5 | Minus |
Blast to na_te.dros performed on 2014-11-28 18:10:24 has no hits.
FMO12356.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-10-09 09:33:50 Download gff for
FMO12356.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| nAcRbeta-96A-RB | 126..681 | 1..556 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:46:39 Download gff for
FMO12356.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| nAcRbeta-96A-RA | 131..686 | 1..556 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:52:22 Download gff for
FMO12356.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| nAChRbeta2-RA | 131..686 | 1..556 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:52:22 Download gff for
FMO12356.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 24514084..24514252 | 388..556 | 97 | <- | Minus |
| 3R | 24514310..24514438 | 259..387 | 100 | <- | Minus |
| 3R | 24514494..24514687 | 65..258 | 100 | <- | Minus |
| 3R | 24514913..24514974 | 1..64 | 93 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:46:39 Download gff for
FMO12356.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 20339806..20339974 | 388..556 | 97 | <- | Minus |
| arm_3R | 20340032..20340160 | 259..387 | 100 | <- | Minus |
| arm_3R | 20340216..20340409 | 65..258 | 100 | <- | Minus |
| arm_3R | 20340635..20340696 | 1..64 | 93 | | Minus |
