FMO12357.5prime Sequence
561 bp (264 high quality bases) assembled on 2012-10-09
> FMO12357.5prime
GACATGTTAATCGGAGCTCGGCCCATACACAGAGTTTATGATGGCGTACA
TGGGTGGCCTAAACCACGTAGCCGAGCCCAGACATGTTTCTGGGAGATCA
TCTCCGATGAGCATGGCATCGATGCCACCGGCGCCTACCACGGTGACAGC
GACCTGCAGCTGGAGCGCATCAATGTGTACTACAATGAGGCGTCCGGTGG
CAAGTACGTGCCCCGCGCTGTCCTTGTCGATCTGGAGCCCGGCACCATGG
ACTCTGTGCGATCGGGACCTTTCGGCCAGATCTTCAGGCCCGACAACTTT
GTGTTCGGCCAGTCGGGTGCCGGCAACAACTGGGCCAAGGGTCATTACAC
ATAGGGTGCTGAGCTGGTGGACTCATTGCTCGATGTTGTCCGCAAGGAGG
CCGAATCCTGCGACTGCCTGCAAGGCTTCCAACTCACACGCTCCCTTGTT
GGTTGTACTGGCTCCGGTATGGGAACCCTGCTGATTTCGAGATCCGCGAG
GAGTACCCCGACAGGATCATGAACACATACTCGTTTGTGCCTTCGCCCAA
TGTGTCGGACA
FMO12357.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:10:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| betaTub56D-RA | 1701 | CG9277-RA | 190..748 | 4..561 | 2590 | 97.7 | Plus |
| betaTub56D-RB | 1596 | CG9277-RB | 169..643 | 88..561 | 2170 | 97.3 | Plus |
| betaTub85D-RA | 1841 | CG9359-RA | 288..757 | 88..556 | 1020 | 81.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:10:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 19448272..19448746 | 561..88 | 2145 | 97.3 | Minus |
| 3R | 32079331 | 3R | 9409679..9409995 | 404..88 | 700 | 81.4 | Minus |
| 2R | 25286936 | 2R | 24310905..24311136 | 191..422 | 515 | 81.5 | Plus |
| 2R | 25286936 | 2R | 19449327..19449410 | 87..4 | 420 | 100 | Minus |
| 3R | 32079331 | 3R | 27972922..27973151 | 550..322 | 395 | 79.1 | Minus |
| 3R | 32079331 | 3R | 27974107..27974342 | 323..88 | 355 | 76.7 | Minus |
| 2R | 25286936 | 2R | 24311227..24311332 | 457..561 | 315 | 88.7 | Plus |
| 3R | 32079331 | 3R | 9409467..9409600 | 556..424 | 305 | 83.6 | Minus |
| 2R | 25286936 | 2R | 24310722..24310832 | 88..198 | 210 | 79.3 | Plus |
Blast to na_te.dros performed on 2014-11-28 18:10:27 has no hits.
FMO12357.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-10-09 09:33:51 Download gff for
FMO12357.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| betaTub56D-RA | 159..719 | 1..560 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:46:41 Download gff for
FMO12357.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| betaTub56D-RA | 187..747 | 1..560 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:52:24 Download gff for
FMO12357.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| betaTub56D-RA | 187..747 | 1..560 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:52:24 Download gff for
FMO12357.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 19448273..19448746 | 88..560 | 97 | <- | Minus |
| 2R | 19449327..19449413 | 1..87 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:46:41 Download gff for
FMO12357.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 15335778..15336251 | 88..560 | 97 | <- | Minus |
| arm_2R | 15336832..15336918 | 1..87 | 97 | | Minus |
