FMO12366.5prime Sequence
916 bp (869 high quality bases) assembled on 2012-10-09
> FMO12366.5prime
AGTCGACATGTCTATGAAAGCCATCATCATCGGATGCCTGGCCGTGCTGG
TGACACTGGGTGCGGCCCTCGATGAACATCCTCATTTCTGCATTAAGACA
GATCCCCTCCTTCTGTCGGAGATCGATCGACATGTGGTCATCCCCAGCGA
GGAGGACCTACAGTGCCATATTAAGGCCACCACGTTGACCCAAAACGAGA
AGGCAAACCTCGTGGACACCCTGTGCGCAGATCATGGCTCCACCACAATC
AGGCGAGATAACCATCACTTTTTTAGGCTGCGCAACGGAGAACTGACTGG
AAGGGGAGTTCAGACGGAGGTGTGCGCCAACGGAGGTGATTCGGTCCTGG
CCTGGATTCCCTACCACACCGTGCTCAAGAACTATGCGGCCGAGCTGAAT
CCCAAGGAGCGACTGACATACATTGCCAAGGCCACGAACGTGGAGCGGGA
GAAGACAGAGCTCTGTCACTTCCGACACACGGATCTTGTCAATGCGGTGT
CCGACAATCTGTTCACCTGTGTGGTCATGATTTTTGGCGATAACTTTTAT
GGTCTTGAGGATAACATTAACGTACTGGTGGAACTGGAACCTTTGGCATA
CCAGCTGAGGAACATTACTTACCTGCCGTGGCGCAATGTGACTAACAGCT
ACAAGATGCACCTGGGTGACAGTGTGCTCCGAAATCCCAGTGGCGAACGT
AAGCCCATTTACGGTAGCCTGAACTACGATTTTGTGGAAAAGATCCTTGT
GAACATGTCCAGTGTGTACCAGCATAGGAAGCTATCCAGGCTGCCTCTGC
TTCTTCAAAGCACCGGTCCTCTGTCTCGAAGTGGACTTGTATGGTAGGGT
GGGCTCGATGTTGCGGAAAAAAGCCCTATTCTCTACGAATCTCTGCACCC
CCAGAACCAGGCTGAA
FMO12366.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:10:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15674-RB | 1620 | CG15674-RB | 85..948 | 8..871 | 4140 | 98.8 | Plus |
| CG15674-RA | 1809 | CG15674-RA | 274..1137 | 8..871 | 4140 | 98.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:10:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 21632963..21633309 | 201..547 | 1735 | 100 | Plus |
| 2R | 25286936 | 2R | 21633367..21633690 | 548..871 | 1340 | 96.9 | Plus |
| 2R | 25286936 | 2R | 21632280..21632479 | 8..207 | 985 | 99.5 | Plus |
Blast to na_te.dros performed on 2014-11-28 18:10:41 has no hits.
FMO12366.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-10-09 09:33:55 Download gff for
FMO12366.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15674-RA | 1..874 | 14..889 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:46:50 Download gff for
FMO12366.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15674-RA | 267..1153 | 1..889 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:52:31 Download gff for
FMO12366.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15674-RA | 267..1153 | 1..889 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:52:31 Download gff for
FMO12366.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 21632273..21632474 | 1..202 | 98 | -> | Plus |
| 2R | 21632965..21633309 | 203..547 | 100 | -> | Plus |
| 2R | 21633367..21633706 | 548..889 | 95 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:46:50 Download gff for
FMO12366.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 17519778..17519979 | 1..202 | 98 | -> | Plus |
| arm_2R | 17520470..17520814 | 203..547 | 100 | -> | Plus |
| arm_2R | 17520872..17521211 | 548..889 | 95 | | Plus |
