Clone FMO12368 Report

Search the DGRC for FMO12368

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:123
Well:68
Vector:pMK33-CFH-BD
Associated Gene/TranscriptCG30187-RC
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO12368.5prime Sequence

752 bp (752 high quality bases) assembled on 2012-10-09

> FMO12368.5prime
GTCGACATGGCAGCTGTACACAATCGGACACATTTTATCTGCGGTGGCAC
GCTGATTCATAAGCGATTCGTTTTGACAGCTGCGCATTGCATAGTTGACC
AAGACGTCCAATCAGTGAGTTTGGGTGCCTACAACAAGAGTGATCCTGCA
GATCGGAAAGACGTCATAACAGCAGTAGTGCATAGTTCGTTTGACGTTCG
TGCTTCCTATGAAAATGACATTGGCCTGCTAAAGCTGTCCAGCGACGTTA
TCTTTAATGCCCTTATTCGTCCAATCTGCATCGTTTTGAACAAGAGTATG
GCCAACCATATGCGCAACATGCGGACCTTTAAAGCCTTTGGATGGGGAAC
ATTACGCGGCAACAAGACATCCGATATACTTCAGACAATCATCCTTAATC
ATTTGGATCGTGAAGAGTGCTATATGGAATTGTCTGTTTATCCCAGTGAG
AAGCAGATATGCGCTGGTGTACCTTCCGGAGACACCTGTGGGGGCGATTC
TGGTGGTCCCCCTGACAAACGATGTGTTTATTCAAGGTATCGGCAATCGG
GAAGTTCAGTTCGGGATCATCAGCGTTGGCAAAACATCCTGCGATGGACA
GGGAGTGTATACCGATTTGATGAGCTTTGCGGACTGGATTAAGATGACAA
TAGAGAGGTTATCTATCGAGGATGAACCCAGTCTGCACCCTTCTACAAAT
TATACCCCAGCAGCTAGATGTTTTTTGTACAACGACTGTGGCGGCGCCAA
CA

FMO12368.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:10:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG30187-RC 1573 CG30187-RC 166..913 7..752 3630 99.3 Plus
CG30187-RD 1606 CG30187-RD 166..913 7..752 3630 99.3 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:10:46
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 22917703..22918198 752..259 2270 99 Minus
2R 25286936 2R 22918260..22918408 259..111 745 100 Minus
2R 25286936 2R 22918567..22918625 65..7 295 100 Minus
2R 25286936 2R 22918466..22918511 110..65 230 100 Minus
Blast to na_te.dros performed on 2014-11-28 18:10:47 has no hits.

FMO12368.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-10-09 09:33:56 Download gff for FMO12368.5prime
Subject Subject Range Query Range Percent Splice Strand
CG30187-RC 136..888 1..751 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:46:54 Download gff for FMO12368.5prime
Subject Subject Range Query Range Percent Splice Strand
CG30187-RD 160..912 1..751 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:52:34 Download gff for FMO12368.5prime
Subject Subject Range Query Range Percent Splice Strand
CG30187-RD 160..912 1..751 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:52:34 Download gff for FMO12368.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 22917704..22918197 260..751 98 <- Minus
2R 22918260..22918408 111..259 100 <- Minus
2R 22918466..22918511 65..110 100 <- Minus
2R 22918568..22918631 1..64 95   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:46:54 Download gff for FMO12368.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 18805227..18805720 260..751 98 <- Minus
arm_2R 18805783..18805931 111..259 100 <- Minus
arm_2R 18805989..18806034 65..110 100 <- Minus
arm_2R 18806091..18806154 1..64 95   Minus