FMO12370.5prime Sequence
551 bp (546 high quality bases) assembled on 2012-10-09
> FMO12370.5prime
TCGACATGGCAACTGCAACCAGCGGCAGTGGACTCCATCTGGAGGCCATC
GATCGCATCGGCTCCATTCCCCTTGTGGAATCCAGTGTGAAGCGGGTGGA
GACCATCTACGATAAGGTGAAGAACAACAATAGGCTATTCTCATGGTATT
TTGAGACGGCGGAGGCCACCATTTCGGCCGCCTACGAAACCATCCAGCCG
GCGGTCAAGCTCTTCGAGCCATCCATTCAGCGCCTGGACAACGTGATGTG
CAAAAGCCTGGACATTCTGGAGCAGCGCATACCACTGGTCTATCTGCCGC
CCGAAATGATGTACTGGAACACCAAGGAGTACATGTCCGATCACCTGGTG
CGTCCGGTTCTGAAACGCGCCGATTCTGTCAAGCAAATCGGTAATGCTGT
CCTCGAGAGTCCACTTACCACTTATGCAGCCGAGCGCATTGATGGCGCTT
TCTCAGTCGGCGATAAGTTCGTGGACAAGTACCTGGTGCCCATCCTAATA
GATCAGGATCAGACCGATGTGAAAAATTGGTTTTCGGCCCTGAATGATAA
T
FMO12370.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:10:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Lsd-1-RA | 1510 | CG10374-RA | 76..620 | 6..550 | 2635 | 99.1 | Plus |
| Lsd-1-RD | 1432 | CG10374-RD | 76..589 | 6..519 | 2525 | 99.4 | Plus |
| Lsd-1-RC | 1813 | CG10374-RC | 457..970 | 6..519 | 2525 | 99.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:10:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 23764385..23764684 | 9..308 | 1500 | 100 | Plus |
| 3R | 32079331 | 3R | 23764748..23764959 | 308..519 | 1015 | 98.6 | Plus |
Blast to na_te.dros performed on 2014-11-28 18:10:30 has no hits.
FMO12370.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-10-09 09:33:51 Download gff for
FMO12370.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Lsd-1-RA | 453..1001 | 1..551 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:46:42 Download gff for
FMO12370.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Lsd-1-RA | 72..620 | 1..551 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:52:25 Download gff for
FMO12370.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Lsd-1-RA | 72..620 | 1..551 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:52:25 Download gff for
FMO12370.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 23764383..23764684 | 5..308 | 99 | -> | Plus |
| 3R | 23764749..23764959 | 309..519 | 98 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:46:42 Download gff for
FMO12370.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 19590471..19590681 | 309..519 | 98 | -> | Plus |
| arm_3R | 19590105..19590406 | 5..308 | 99 | -> | Plus |
