Clone FMO12371 Report

Search the DGRC for FMO12371

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:123
Well:71
Vector:pMK33-CFH-BD
Associated Gene/TranscriptCG15088-RC
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO12371.5prime Sequence

772 bp (626 high quality bases) assembled on 2012-10-09

> FMO12371.5prime
GTCGACATGACGCAGCTAGAGATTTCCAAGAAGTCGGAAAAACCAGCGGA
AAAACCGGCGGAGCAATGGGGAAATGGACTCGAATTTCTTTTCTCCTGCA
TTTCATTATCCGTGGGATTGGGGAATATCTGGCGTTTTCCCTACATTGCC
TTCCAGAATGGCGGCGGTACCTTTGTGATACCGTACCTGATTGCCCTCCT
GGTAATTGGACGGCCTGTCTACTATCTGGAGATATCCCTGGGCCAGTTCA
CGGGTCGCGGCGTGGTCAAGGCCTTCGATATGGCTCCCCTGCTCAAGGGC
GTGGCATTGGGTCAAGTCCTGGCCACAGCCGCCTCCATCACATACTACTC
CAGCATTATGGCTTTGACTCTACGATTCTGGCTGGCCTCCTTCGGCTCCG
AGCTGCCATGGAGCAGGTGCTGGGAGAGCTGGGGCACCGATTGCCACGAC
TTTAATGCTCAAAATAGCAGTGGAAAAAATGTCACCGGCACAGCTGTACT
TTGAACGTGAGATCCTTCATGAGGTGCCCAACATAGACAACGGACTGAGT
CTGCCCAACTGGCAACTGGTGGCCTGTTTGGCGATTGCTTGCCTGGTCAT
CGGAGGAGTCCTCATTCGCGGCATTAAGAGCAGTGCCAAGGCGGCTAATT
TCCTGGGCGAATTCCCCTATGAGGAGCTGCTCATCTGCTCTTGAGAGCCG
TACCCTGCATGAGCCATCAATGCATTATATACTTCCTCAGCACATGCTGA
GAGCGCTGAATCCACTCGTTTG

FMO12371.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:10:34
Subject Length Description Subject Range Query Range Score Percent Strand
List-RD 1867 CG15088-RD 38..815 2..772 3415 96.7 Plus
List-RC 1827 CG15088-RC 38..815 2..772 3415 96.7 Plus
CG8850-RA 2086 CG8850-RA 260..400 91..231 210 76.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:10:33
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 18729743..18730244 504..2 2405 99 Minus
2R 25286936 2R 18729306..18729544 739..505 830 93.7 Minus
2R 25286936 2R 12300721..12300861 231..91 210 76.6 Minus
Blast to na_te.dros performed on 2014-11-28 18:10:33 has no hits.

FMO12371.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-10-09 09:33:52 Download gff for FMO12371.5prime
Subject Subject Range Query Range Percent Splice Strand
CG15088-RD 14..792 1..772 96   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:46:44 Download gff for FMO12371.5prime
Subject Subject Range Query Range Percent Splice Strand
List-RD 37..815 1..772 96   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:52:27 Download gff for FMO12371.5prime
Subject Subject Range Query Range Percent Splice Strand
List-RC 37..815 1..772 96   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:52:27 Download gff for FMO12371.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 18729269..18729544 505..772 92 <- Minus
2R 18729743..18730244 1..504 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:46:44 Download gff for FMO12371.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 14616774..14617049 505..772 92 <- Minus
arm_2R 14617248..14617749 1..504 98   Minus