FMO12374.5prime Sequence
796 bp (693 high quality bases) assembled on 2012-10-09
> FMO12374.5prime
GTCGACATGGCGCGCAAGAATGCCCAGGCGGAGGACCTCTCCAACGTGGA
GTTCGAGACGAGCGAGGATGTGGAGGTGATACCCACATTCAACGCCATGA
ATCTAAAGGAGGAGCTGCTACGCGGCATCTACGCGTACGGCTTCGAGAAA
CCCTCGGCCATTCAGCAAAGGAGCATTACGCCTATCGTCAAGGGACGGGA
TGTGATTGCCCAGGCGCAATCAGGCACGGGCAAAACCGCCACCTTCTCCA
TCTCCATCCTGCAGAGCCTGGACACCACGCTGCGGGAGACGCAGGTTCTG
TGCCTGTCGCCCACTCGCGAGTTGGCTGTGCAAATCCAGAAAGTCATTCT
TGCCCTCGGCGACATGATGAATGTCCAGTGCCATGTGTGCATCGGTGGCA
CCAACCTGGGCGAGGATATCCGCAAATTGGACTACGGTCAACACATTGTG
ATCGGCACTCCAGGACGAGTCTTCGACATGATCAAGCGACGAGTGCTGCG
AACAAGAGCCATCAAGATGCTAGTGCTGGACGAAGCTGACGAGATGCTTA
ATAAGGGTTTCAAGGAACAGATATACGATGTGTATCGCCTACTTGCCACC
AGCCACCCAGGTGGTGCTCATCTCACTACCTTTGCCCCACGAGATTCTCG
AGATGACCTCCAATTTATGACAGATCCGATTCGCATCTTGTTCAGCGTGA
TAAATTGACACTGGAAAGGATCAATTATTTCTTCTCGCCGTGCAGCGCGA
GGAATGGAAATTTCTATACCCTGTGCGATCTGTACAATACTCTGAC
FMO12374.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:10:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| eIF4AIII-RA | 1481 | CG7483-RA | 129..921 | 5..796 | 3595 | 97.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:10:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 8313530..8313897 | 139..506 | 1810 | 99.5 | Plus |
| 3R | 32079331 | 3R | 8313951..8314140 | 505..694 | 750 | 95.3 | Plus |
| 3R | 32079331 | 3R | 8313336..8313471 | 5..140 | 680 | 100 | Plus |
| 3R | 32079331 | 3R | 8314211..8314304 | 703..796 | 255 | 89.5 | Plus |
Blast to na_te.dros performed on 2014-11-28 18:10:53 has no hits.
FMO12374.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-10-09 09:33:58 Download gff for
FMO12374.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| eIF4AIII-RA | 119..915 | 1..796 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:46:57 Download gff for
FMO12374.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| eIF4AIII-RA | 125..921 | 1..796 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:52:38 Download gff for
FMO12374.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| eIF4AIII-RA | 125..921 | 1..796 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:52:38 Download gff for
FMO12374.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 8313332..8313470 | 1..139 | 98 | -> | Plus |
| 3R | 8313531..8313897 | 140..506 | 99 | -> | Plus |
| 3R | 8313953..8314144 | 507..697 | 96 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:46:57 Download gff for
FMO12374.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 4139054..4139192 | 1..139 | 98 | -> | Plus |
| arm_3R | 4139253..4139619 | 140..506 | 99 | -> | Plus |
| arm_3R | 4139675..4139866 | 507..697 | 96 | -> | Plus |
